AtongFnDomain: The functional domains shared by the tested pairs in Tong et...

In SLGI: Synthetic Lethal Genetic Interaction

Description

Data developed from Tong et. al. buffering experiments.

Usage

data(AtongFnDomain)

Format

A list containing 3 items.

pairs

Dataframe of all the gene pairs and their synthetic lethality status.

SharedPfam

List of the Pfam domains shared by each pair. The order of this list is the same as the order of the pairs.

SharedSMART

List of the SMART domains shared by each pair. The order of this list is also the same as the order of the pairs.

Author(s)

Z. Jiang

Source

Created from the association matrix reported by Tong et al. and the Pfam (Protein family database http://pfam.janelia.org/) and SMART database of yeast.

References

Global Mapping of the Yeast Genetic Interaction Network, Tong et al, Science Vol.303, 2004 Saccharomyces Genome Database

Examples

data(AtongFnDomain)
names(AtongFnDomain)

SLGI documentation built on Nov. 8, 2020, 11 p.m.