siResult-class: A class for representing the result of the SLGI graph...

In SLGI: Synthetic Lethal Genetic Interaction

Description

A class for representing the result of the modelSLGI function.

Slots

Observed:

Return a "numeric" vector: the observed number of synthetic genetic interactions between components of one or two cellular organizational units

Expected:

Return a matrix: the expected number of synthetic genetic interactions between components of one or two cellular organizational units

Methods

plot

Graphical representation of the permutation model result

compare

Summarizes the result of the modelSLGI function

Author(s)

N. LeMeur

See Also

modelSLGI,plot

Examples

## apply a permutation model 
 data(ScISIC)
 data(Atong)
 data(SGA)
 model <-  modelSLGI(Atong, universe= SGA, interactome=ScISIC,
  type="intM", perm=2)

model

SLGI documentation built on Nov. 8, 2020, 11 p.m.