TFmat: Transcription Factor Binding Affinities

In SLGI: Synthetic Lethal Genetic Interaction

Description

The data are from Lee et al, the rows of the matrix represent genes in S. cerevisiae, the columns known transcription factor. The value in each entry represents the p-value, as reported by Lee et al, for the transcription factor (TF) binding upstream of the gene.

Usage

data(TFmat)

Format

TFmat is a matrix, rows represent genes, columns transcription factors and the elements are p-values representing some notion of the likelihood that the transcription factor binds up stream of the gene.

Author(s)

Z. Jiang

Source

Supplementary material from http://web.wi.mit.edu/young/regulator_network/

References

Transcriptional Regulatory Networks in Saccharomyces cerevisiae, Lee et al. Science 298:799-804 (2002).

Examples

data(TFmat)

SLGI documentation built on Nov. 8, 2020, 11 p.m.