write.bindingsites: writes predicted binding sites as a BED file.

In cobindR: Finding Co-occuring motifs of transcription factor binding sites

Description

writes predicted binding sites as a BED file.

Usage

## S4 method for signature 'cobindr'
write.bindingsites(x, file = NULL, background = FALSE)

Arguments

x	an object of the class "cobindr", which holds all necessary information about the sequences and the predicted binding sites.
file	path to file. If filename is 'NULL' a filename is generated based on the name of the object of class "cobindr".
background	logical flag. If background is 'TRUE' the binding sites found in the background sequences are used.

Note

At the moment write.bindingsites() only works for sequences based on gene ids. Otherwise please use write.bindingsites.table().

Author(s)

Stefan Kroeger <[e-mail]>

See Also

write.bindingsites.table, write.pairs, write.sequences, write

cobindR documentation built on April 28, 2020, 6:40 p.m.