MRexperiment2biom: MRexperiment to biom objects
In metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Description Usage Arguments Value See Also

View source: R/MRexperiment2biom.R

Wrapper to convert MRexperiment objects to biom objects.

MRexperiment2biom(
  obj,
  id = NULL,
  norm = FALSE,
  log = FALSE,
  sl = 1000,
  qiimeVersion = TRUE
)

`obj`	The MRexperiment object.
`id`	Optional id for the biom matrix.
`norm`	normalize count table
`log`	log2 transform count table
`sl`	scaling factor for normalized counts.
`qiimeVersion`	Format fData according to QIIME specifications (assumes only taxonomy in fData).

A biom object.

loadMeta loadPhenoData newMRexperiment loadBiom biom2MRexperiment

metagenomeSeq documentation built on Nov. 8, 2020, 5:34 p.m.

metagenomeSeq index

Package overview README.md fitTimeSeries: differential abundance analysis through time or location metagenomeSeq: statistical analysis for sparse high-throughput sequencing

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