Reducing the dimensionality of the expression data is a core step in the Monocle workflow. After you call reduceDimension(), this function will return the new coordinates of your cells in the reduced space.
A CellDataSet object.
A matrix, where rows are cell coordinates and columns correspond to dimensions of the reduced space.
1 2 3 4
## Not run: S <- reducedDimS(HSMM) ## End(Not run)