Retrieves the coordinates of each cell in the reduced-dimensionality space generated by calls to reduceDimension.

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Description

Reducing the dimensionality of the expression data is a core step in the Monocle workflow. After you call reduceDimension(), this function will return the new coordinates of your cells in the reduced space.

Usage

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Arguments

cds

A CellDataSet object.

Value

A matrix, where rows are cell coordinates and columns correspond to dimensions of the reduced space.

Examples

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## Not run: 
S <- reducedDimS(HSMM)

## End(Not run)

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