Biocview "CpGIsland"

TurboNorm

A fast scatterplot smoother suitable for microarray normalization

vjcitn/BiocOncoTK

Bioconductor components for general cancer genomics

BiocOncoTK

Bioconductor components for general cancer genomics

DeepBlueR

DeepBlueR

MPIIComputationalEpigenetics/DeepBlueR

DeepBlueR

MPIIComputationalEpigenetics/DeepBlue-R

DeepBlueR

TomMayo/M3Ddevel

(development for M3D) Identifies differentially methylated regions across testing groups

MEDIPS

DNA IP-seq data analysis

paolopavan/medips

DNA IP-seq data analysis

chavez-lab/MEDIPS

DNA IP-seq data analysis

HPCBio/MEDIPS-BioC

DNA IP-seq data analysis

emmecola/MEDIPS

DNA IP-seq data analysis

methylumi

Handle Illumina methylation data

seandavi/methylumi

Handle Illumina methylation data

M3D

Identifies differentially methylated regions across testing groups

bigmelon

Illumina methylation array analysis for large experiments

TJGorrie/bigmelon

Illumina methylation array analysis for large experiments

qsea

IP-seq data analysis and vizualization

MatthiasLienhard/qsea

IP-seq data analysis and vizualization

MPIIComputationalEpigenetics/MAGAR

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

Liuy12/MBDDiff

MBDDiff for processing MBDcap-seq datasets

MEDME

Modelling Experimental Data from MeDIP Enrichment

wvictor14/plmec

Placental DNA methylation analysis tools

wvictor14/planet

Placental DNA methylation analysis tools

RnBeads

RnBeads

genomation

Summary, annotation and visualization of genomic data

BIMSBbioinfo/genomation

Summary, annotation and visualization of genomic data

HELP

Tools for HELP data analysis