Biocview "mRNAMicroarray"

EventPointer

An effective identification of alternative splicing events using junction arrays and RNA-Seq data

jpromeror/EventPointer

An effective identification of alternative splicing events using junction arrays and RNA-Seq data

acde

Artificial Components Detection of Differentially Expressed Genes

arcolombo/Rccdashboard

Assess Differential Gene Expression Experiments with ERCC Controls

usnistgov/erccdashboard_preBioC

Assess Differential Gene Expression Experiments with ERCC Controls

munrosa/erccdashboard

Assess Differential Gene Expression Experiments with ERCC Controls

erccdashboard

Assess Differential Gene Expression Experiments with ERCC Controls

goSTAG

A tool to use GO Subtrees to Tag and Annotate Genes within a set

brianbennettphd/goSTAG

A tool to use GO Subtrees to Tag and Annotate Genes within a set

Nanostring-Biostats/NanoStringExperiment

Base NanoString Experiment Class

CEMiTool

Co-expression Modules identification Tool

csbl-usp/CEMiTool

Co-expression Modules identification Tool

broadinstitute/CommunityAMARETTO

CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems

fjcamlab/deco

Decomposing Heterogeneous Cohorts using Omic Data Profiling

deco

Decomposing Heterogeneous Cohorts using Omic Data Profiling

ovrhuman/MultiEWCE

EWCE for Multiple Gene Lists

NathanSkene/EWCE

Expression Weighted Celltype Enrichment

EWCE

Expression Weighted Celltype Enrichment

fcoex

FCBF-based Co-Expression Networks for Single Cells

lubianat/fcoex

FCBF-based Co-Expression Networks for Single Cells

csbl-usp/fcoex

FCBF-based Co-Expression Networks for Single Cells

MetaVolcanoR

Gene Expression Meta-analysis Visualization Tool

csbl-usp/MetaVolcanoR

Gene Expression Meta-analysis Visualization Tool

guypwhunt/GEO_Explorer

GEOexplorer: a webserver for gene expression analysis and visualisation

guypwhunt/r_shiny_geo2r_visulisation

GEOexplorer: a webserver for gene expression analysis and visualisation

guypwhunt/GEOexplorer

GEOexplorer: a webserver for gene expression analysis and visualisation

affylmGUI

GUI for limma Package with Affymetrix Microarrays

limmaGUI

GUI for limma Package With Two Color Microarrays

broadinstitute/ImagingAMARETTO

ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers

hdeberg/limma

Linear Models for Microarray Data

limma

Linear Models for Microarray Data

MPIIComputationalEpigenetics/MAGAR

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

fboulnois/made

Microarray Analysis of Differential Expression

Nanostring-Biostats/GeomxTools

NanoString GeoMx Tools

Nanostring-Biostats/NanoStringNCTools

NanoString nCounter Tools

NathanSkene/PatchseqMap

PatchseqMap

pbcmc

Permutation-Based Confidence for Molecular Classification

GWENA

Pipeline for augmented co-expression analysis

Kumquatum/GWENA

Pipeline for augmented co-expression analysis

puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA gene expression data

gevaertlab/AMARETTO

Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

AMARETTO

Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

broadinstitute/PerturbationAMARETTO

Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

kkrismer/transite

RNA-binding protein motif analysis

transite

RNA-binding protein motif analysis

sigFeature

sigFeature: Significant feature selection using SVM-RFE & t-statistic

pijush1285/sigFeature

sigFeature: Significant feature selection using SVM-RFE & t-statistic

discordant

The Discordant Method: A Novel Approach for Differential Correlation

siskac/discordant

The Discordant Method: A Novel Approach for Differential Correlation

pfh/topconfects

Top Confident Effect Sizes

topconfects

Top Confident Effect Sizes