Biocview "miRNA"

A collection of miRNA annotations

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Analyze isomiRs and miRNAs from small RNA-seq

Analyze small RNA-seq count data

An integrated analysis package of miRNA and mRNA expression data

An R package for analyzing miRNA-mRNA interactions

A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets

Convert miRNA Names to Different miRBase Versions

Detection of miRNAs that regulate interacting groups of pathways

Dry lab for exploring miRNA-mRNA relationships

Global Test for Counts

Infer miRNA-mRNA interactions using paired expression data from a single sample

miRNApath: Pathway Enrichment for miRNA Expression Data

miRNAtap: microRNA Targets - Aggregated Predictions

mirtarbase: a database of validated miRNA target gene interactions

mirTarRnaSeq

Multi-omics Classification, Functional Enrichment and Network Inference analysis

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

scanMiR

scanMiR shiny application

small RNA-Seq Utilities

SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information

Time sensitive microRNA-mRNA integration, analysis and network generation tool