API for DCLEAR
Distance Based Cell Lineage Reconstruction
| Global functions | |
|---|---|
| DCLEAR | Man page |
| WH | Man page Source code |
| WH_train | Man page Source code |
| WH_train_fit | Man page Source code |
| add_deletion | Man page Source code |
| add_dropout | Man page Source code |
| as_igraph | Man page |
| as_igraph,data.frame-method | Man page |
| as_igraph,phylo-method | Man page |
| as_lineage_tree | Man page |
| as_lineage_tree,phyDat,phylo,lineage_tree_config-method | Man page |
| as_phylo | Man page |
| as_phylo,igraph-method | Man page |
| dist_kmer_replacement_inference | Man page Source code |
| dist_replacement | Man page |
| dist_replacement,phyDat,kmer_summary,integer-method | Man page |
| dist_replacement,phyDat,missing,integer-method | Man page |
| dist_w_ham | Source code |
| dist_w_ham2 | Source code |
| dist_weighted_hamming | Man page |
| dist_weighted_hamming,phyDat,numeric-method | Man page |
| downsample | Man page |
| downsample,igraph-method | Man page |
| downsample,lineage_tree-method | Man page |
| get_distance_prior | Man page Source code |
| get_leaves | Man page |
| get_leaves,lineage_tree-method | Man page |
| get_node_names | Man page Source code |
| get_replacement_probability | Man page Source code |
| get_sequence | Man page Source code |
| get_transition_probability | Man page Source code |
| lineages | Man page |
| positional_mutation_prob | Man page Source code |
| process_sequence | Man page |
| process_sequence,phyDat-method | Man page |
| prune | Man page |
| prune,igraph-method | Man page |
| prune,lineage_tree-method | Man page |
| random_tree | Man page Source code |
| rbind,phyDat-method | Man page |
| sample_mutation_outcome | Man page Source code |
| sample_mutation_site | Man page Source code |
| sample_outcome_prob | Man page Source code |
| score_simulation | Man page Source code |
| sim_seqdata | Man page Source code |
| simulate | Man page |
| simulate,lineage_tree_config,missing-method | Man page |
| simulate,lineage_tree_config,phyDat-method | Man page |
| simulate_core | Man page Source code |
| substr_kmer | Man page |
| substr_kmer,kmer_summary-method | Man page |
| subtract | Man page |
| subtract,lineage_tree,lineage_tree-method | Man page |
| subtree | Man page |
| subtree,lineage_tree-method | Man page |
| subtree,phylo-method | Man page |
| summarize_kmer | Man page |
| summarize_kmer,phyDat-method | Man page |
| summarize_kmer_core | Man page Source code |
