Files in DCLEAR

Distance Based Cell Lineage Reconstruction

README.md R/RcppExports.R R/get_leaves.r R/as_phylo.r R/subtree.r R/WH_train_fit.r R/lineages-data.r R/dist_weighted_hamming.r R/as_igraph.r R/prune.r R/WH_train.r R/rbind.r R/process_sequence.r R/as_lineage_tree.r R/simulate.r R/AllGeneric.r R/subtract.r R/WH.R R/sim_seq.R R/globals.r R/summarize_kmer.r R/dist_replacement.r R/substr_kmer.r R/downsample.r R/AllClass.r R/DCLEAR-package.r inst/doc/PrepC3.R inst/doc/PrepC3.Rmd inst/doc/WHhowto.Rmd inst/doc/WHhowto.R vignettes/PrepC3.Rmd vignettes/WHhowto.Rmd man/sample_mutation_outcome.Rd man/summarize_kmer.Rd man/dist_weighted_hamming.Rd man/downsample-lineage_tree-method.Rd man/substr_kmer.Rd man/get_replacement_probability.Rd man/WH_train.Rd man/substr_kmer-kmer_summary-method.Rd man/dist_kmer_replacement_inference.Rd man/prune.Rd man/get_transition_probability.Rd man/downsample.Rd man/get_leaves-lineage_tree-method.Rd man/dist_replacement.Rd man/lineages.Rd man/prune-igraph-method.Rd man/simulate-lineage_tree_config-missing-method.Rd man/get_leaves.Rd man/get_distance_prior.Rd man/add_deletion.Rd man/as_igraph-data.frame-method.Rd man/as_igraph.Rd man/positional_mutation_prob.Rd man/subtract-lineage_tree-lineage_tree-method.Rd man/add_dropout.Rd man/dist_weighted_hamming-phyDat-numeric-method.Rd man/rbind-phyDat-method.Rd man/dist_replacement-phyDat-missing-integer-method.Rd man/sim_seqdata.Rd man/process_sequence.Rd man/simulate_core.Rd man/subtree.Rd man/summarize_kmer_core.Rd man/as_lineage_tree.Rd man/subtree-phylo-method.Rd man/DCLEAR.Rd man/simulate-lineage_tree_config-phyDat-method.Rd man/WH.Rd man/simulate.Rd man/as_phylo-igraph-method.Rd man/process_sequence-phyDat-method.Rd man/sample_outcome_prob.Rd man/summarize_kmer-phyDat-method.Rd man/subtree-lineage_tree-method.Rd man/as_igraph-phylo-method.Rd man/as_lineage_tree-phyDat-phylo-lineage_tree_config-method.Rd man/dist_replacement-phyDat-kmer_summary-integer-method.Rd man/downsample-igraph-method.Rd man/get_sequence.Rd man/as_phylo.Rd man/prune-lineage_tree-method.Rd man/sample_mutation_site.Rd man/random_tree.Rd man/score_simulation.Rd man/subtract.Rd man/get_node_names.Rd man/WH_train_fit.Rd