Files in Morpho

Calculations and Visualisations Related to Geometric Morphometrics

R/qqmat.r R/write.pts.r R/icpmat.r R/groupPCA.r R/slider3d.r R/meshcube.r R/CVAdists.r R/barycenter.r R/colors.r R/quad2trimesh.r R/orp.r R/fixLMtps.r R/permudist.r R/addo.r R/r2morphoj.r R/rot.proc.r R/mcNNindex.r R/mesh2ply.r R/check.lm.r R/histGroup.r R/fiducials.r R/mergeMeshes.r R/readallTPS.r R/mesh2grey.r R/lineplot.r R/plot.normals.r R/ignoreNA.r R/eigenPCA.r R/ComputeTransform.r R/read.lmdta.r R/slider2d.r R/pcAlign.r R/angleTest.r R/CAC.r R/ply2mesh.r R/mirror.r R/predictShape.lm.r R/fx.r R/relwarps.r R/CVA.crova.r R/ang.r R/RegScore.r R/procAOVsym.r R/PCdist.r R/mesh2obj.r R/deformGrid3d.r R/obj2mesh.r R/ray2mesh.r R/vertex.r R/scalemesh.r R/conv2backf.r R/difplot.lm2D.r R/meshDistZExport.r R/kendalldist.r R/updateNormals.r R/cutSpace.r R/tanplan.r R/angle.calc.r R/fixLMmirror.r R/r2morphologika.r R/ProcGPA.r R/calcTang_U_s.r R/CVA.r R/restoreShapes.r R/fastKmeans.r R/crossp.r R/exVar.r R/projRead.r R/gdif.r R/solutionSpace.r R/proc.weight.r R/points2plane.r R/regdist.raw.r R/difplot.lm.r R/updateIndices.r R/procSym.r R/line2plane.r R/place.patch.r R/symmetrize.r R/NNshapeReg.r R/calcGamma.r R/meshDistMatrix.r R/bindArr.r R/permuvec.r R/calcTang_U.r R/CreateL.r R/read.pts.r R/data2platonic.r R/retrodeform.r R/onUnload.r R/computeArea.r R/typprob.r R/virtualMeshScan.r R/asymPermu.r R/rotmesh.onto.r R/meshres.r R/closemeshKD.r R/pcaplot3d.r R/name2.r R/Morpho-package.R R/PCmeaning.r R/warpmovie.matrix.r R/Atlas.r R/groupPCAcrova.r R/relax.lm.r R/scaleproc.r R/write.obj.r R/meshPlaneIntersect.r R/covDist.r R/equidistantCurve.r R/checkNA.r R/cExtract.r R/classify.r R/list2array.r R/rotonto.r R/anonymize.r R/applyTransform.r R/deformGrid2d.r R/warpmovie.r R/prcompfast.r R/createVarTable.r R/createMissingList.r R/rotaxis.r R/read.obj.r R/getSides.r R/rotonmat.r R/armaGinv.r R/vecx.r R/read.csv.folder.r R/readLandmarks.csv.r R/cSize.r R/read.mpp.r R/file2mesh.r R/meshDist.r R/pointsOnOutline.r R/find.outliers.r R/pls2B.r R/tps3d.r tests/testthat.R tests/testthat/test-CVA.r tests/testthat/test-slider3d.r tests/testthat/test-pls2B.r tests/testthat/test-relWarps.r tests/testthat/test-mirror.r man/typprob.Rd man/predictPLSfromData.Rd man/groupPCA.Rd man/getFaces.Rd man/areaSphere.Rd man/cSize.Rd man/angle.calc.Rd man/pcaplot3d.Rd man/resampleCurve.Rd man/Morpho-deprecated.Rd man/scalemesh.Rd man/createAtlas.Rd man/tangentPlane.Rd man/r2morphoj.Rd man/histGroup.Rd man/PCdist.Rd man/plotNormals.Rd man/checkNA.Rd man/rotaxisMat.Rd man/createMissingList.Rd man/getPLSscores.Rd man/write.slicerjson.Rd man/getTrafo4x4.Rd man/boneData.Rd man/solutionSpace.Rd man/regdist.Rd man/lineplot.Rd man/find.outliers.Rd man/placePatch.Rd man/exVar.Rd man/data2platonic.Rd man/fixLMtps.Rd man/CAC.Rd man/meshPlaneIntersect.Rd man/mesh2ply.Rd man/Morpho-package.Rd man/warpmovie3d.Rd man/computeTransform.Rd man/align2procSym.Rd man/classify.Rd man/read.fcsv.Rd man/NNshapeReg.Rd man/getPLSCommonShape.Rd man/bindArr.Rd man/covW.Rd man/getPCtol.Rd man/procSym.Rd man/vecx.Rd man/CreateL.Rd man/qqmat.Rd man/getPCscores.Rd man/invertFaces.Rd man/write.pts.Rd man/slider3d.Rd man/meshres.Rd man/restoreFromPCA.Rd man/mesh2grey.Rd man/mergeMeshes.Rd man/cutSpace.Rd man/permuvec.Rd man/rotonto.Rd man/mirror.Rd man/arrMean3.Rd man/getVisibleVertices.Rd man/ProcGPA.Rd man/write.fcsv.Rd man/restoreShapes.Rd man/RegScore.Rd man/symmetrize.Rd man/predictPLSfromScores.Rd man/fastKmeans.Rd man/LPS2RAS.Rd man/pcAlign.Rd man/procAOVsym.Rd man/read.lmdta.Rd man/proc.weight.Rd man/virtualMeshScan.Rd man/fixLMmirror.Rd man/name2factor.Rd man/cExtract.Rd man/plot.slider3d.Rd man/meshcube.Rd man/meshDist.Rd man/projRead.Rd man/getPointAlongOutline.Rd man/getPLSfromScores.Rd man/getSides.Rd man/line2plane.Rd man/points2plane.Rd man/ply2mesh.Rd man/closemeshKD.Rd man/rotonmat.Rd man/computeArea.Rd man/armaGinv.Rd man/CVA.Rd man/barycenter.Rd man/getTrafoRotaxis.Rd man/list2array.Rd man/applyTransform.Rd man/kendalldist.Rd man/array2list.Rd man/equidistantCurve.Rd man/updateIndices.Rd man/sortCurve.Rd man/cutMeshPlane.Rd man/predict.CVA.Rd man/tps3d.Rd man/permudist.Rd man/updateNormals.Rd man/slider2d.Rd man/quad2trimesh.Rd man/plotAtlas.Rd man/vertex.Rd man/ray2mesh.Rd man/read.mpp.Rd man/render.Rd man/relaxLM.Rd man/anonymize.Rd man/mirror2plane.Rd man/asymPermute.Rd man/read.csv.folder.Rd man/readLandmarks.csv.Rd man/retroDeform3d.Rd man/predict.bgPCA.Rd man/retroDeformMesh.Rd man/plsCoVar.Rd man/predictShape.lm.Rd man/read.pts.Rd man/angleTest.Rd man/rotaxis3d.Rd man/icpmat.Rd man/predictRelWarps.Rd man/colors.Rd man/readallTPS.Rd man/prcompfast.Rd man/pls2B.Rd man/relWarps.Rd man/plsCoVarCommonShape.Rd man/nose.Rd man/getOuterViewpoints.Rd man/checkLM.Rd man/rotmesh.onto.Rd man/getMeaningfulPCs.Rd man/deformGrid2d.Rd man/mcNNindex.Rd man/deformGrid3d.Rd man/read.slicerjson.Rd man/covDist.Rd man/areaSpherePart.Rd