Files in RBesT

R Bayesian Evidence Synthesis Tools

NEWS.md R/transplant.R R/asthma.R R/mixnorm.R R/robustify.R R/forest_plot.R R/stanmodels.R R/mixdist3.R R/oc1S.R R/EM_gmm.R R/mixgamma.R R/mixdiff.R R/integrate_gauss_quadrature.R R/pos2S.R R/preddist.R R/integrate_logit_log.R R/pos1S.R R/knn.R R/dBetaBinomial.R R/mixcombine.R R/mixmvnorm.R R/likelihood.R R/decision2S.R R/mixplot.R R/EM_bmm_mun.R R/log_inv_logit.R R/EM_plot.R R/gMAP_draws.R R/mixjson.R R/Curry.R R/EM_mnmm.R R/BinaryExactCI.R R/posterior.R R/postmix.R R/automixfit.R R/sigma_from_family.R R/EM_msmm.R R/gMAP-center.R R/get_color.R R/crohn.R R/oc2S.R R/mixess.R R/RBesT-package.R R/mixbeta.R R/uniroot_int.R R/EM_logLik.R R/mixstanvar.R R/colitis.R R/AS.R R/KLdivmix.R R/decision1S_boundary.R R/mixmode.R R/decision2S_boundary.R R/colVars.R R/mix.R R/chains2sample.R R/zzz.R R/decision1S.R R/gMAP.R R/predict_gMAP.R R/mixfit.R R/lodds.R R/nsamples.R R/dlink.R R/EM_bmm_ab.R R/plot_gMAP.R R/support.R inst/doc/introduction.R inst/doc/RBesT.pdf inst/doc/introduction.Rmd inst/examples/robustify.R inst/examples/ess.R inst/examples/mixcombine.R inst/examples/predict_gMAP.R inst/sbc/make_reference_rankhist.R inst/sbc/sbc_tools.R inst/sbc/sbc_report_plots.R inst/sbc/sbc_report.R inst/extra/run-oq.R inst/extra/oc2S_interim.R demo/robustMAP.R demo/oc2S-tte.R demo/oc2S_interim.R tests/testthat.R tests/testthat/test-decision1S_boundary.R tests/testthat/test-pos1S.R tests/testthat/test-mixjson.R tests/testthat/helper-utils.R tests/testthat/helper-compressed-fixtures.R tests/testthat/test-mixdiff.R tests/testthat/test-postmix.R tests/testthat/test-utils.R tests/testthat/test-mixdist.R tests/testthat/helper-fixtures.R tests/testthat/test-EM.R tests/testthat/test-gMAP-quadrature-approximation.R tests/testthat/test-design1S-family.R tests/testthat/test-oc2S.R tests/testthat/test-integrate-GQ.R tests/testthat/test-mixstanvar-sampling.R tests/testthat/test-gMAP-s2z-center.R tests/testthat/test-decision2S_boundary.R tests/testthat/test-decision2S.R tests/testthat/test-pos2S.R tests/testthat/test-gMAP-compact-fixtures.R tests/testthat/test-design2S-family.R tests/testthat/helper-s2z.R tests/testthat/test-decision1S.R tests/testthat/helper-mixstanvar.R tests/testthat/test-gMAP-s2z.R tests/testthat/test-posterior.R tests/testthat/test-gMAP.R tests/testthat/test-oc1S.R tests/testthat/test-mixstanvar.R tests/testthat/test-preddist.R tests/testthat/_snaps/decision2S_boundary.md tests/testthat/_snaps/decision2S.md tests/testthat/_snaps/decision1S.md tests/testthat/fixtures-mcmc-src/gmap_s2z_zeta_binomial_ncp_fixture.R tests/testthat/fixtures-mcmc-src/gmap_binomial_fixed_tau_warmup_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_stepsize_ad95_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_prior_pd_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_zeta_binomial_cp_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_switch_off_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_zeta_normal_ncp_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_verbose_binomial_ncp_fixture.R tests/testthat/fixtures-mcmc-src/gmap_binomial_divergent_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_stepsize_ad99_fixture.R tests/testthat/fixtures-mcmc-src/gmap_s2z_switch_on_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_single_trial_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_extreme_no_response_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_covariate_rows_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_covariate_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_extreme_all_response_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_extreme_two_studies_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_fixed_tau_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_noncontinuous_studies_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_tau_strata_rows_fixture.R tests/testthat/fixtures-compact-src/gmap_binomial_fixed_tau_generated_fixture.R tests/testthat/fixtures-compact/gmap_binomial_extreme_all_response_spec.R tests/testthat/fixtures-compact/gmap_binomial_extreme_no_response_spec.R tests/testthat/fixtures-compact/gmap_binomial_fixed_tau_generated_spec.R tests/testthat/fixtures-compact/gmap_binomial_tau_strata_rows_spec.R tests/testthat/fixtures-compact/gmap_binomial_covariate_spec.R tests/testthat/fixtures-compact/gmap_binomial_fixed_tau_spec.R tests/testthat/fixtures-compact/gmap_binomial_single_trial_spec.R tests/testthat/fixtures-compact/gmap_binomial_covariate_rows_spec.R tests/testthat/fixtures-compact/gmap_binomial_noncontinuous_studies_spec.R tests/testthat/fixtures-compact/gmap_binomial_extreme_two_studies_spec.R vignettes/introduction.Rmd man/oc1S.Rd man/robustify.Rd man/logLik.EM.Rd man/sigma_from_family.Rd man/dot-gmap_all_draws.Rd man/postmix.Rd man/chains2sample.Rd man/predict.gMAP.Rd man/create_decision1S_2sided.Rd man/plot.gMAP.Rd man/colVars.Rd man/integrate_gauss_quadrature.Rd man/mixlink.Rd man/draws-RBesT.Rd man/AS.Rd man/decision2S_boundary.Rd man/dot-gmap_diag_df.Rd man/dot-gmap_sampler_summary.Rd man/create_decision1S_1sided.Rd man/mixjson.Rd man/create_decision2S_1sided.Rd man/pos2S.Rd man/nsamples.gMAP.Rd man/log_inv_logit.Rd man/fill.Rd man/dot-gmap_thin_draws.Rd man/crohn.Rd man/mixbeta.Rd man/dot-gmap_empty_diag_draws_array.Rd man/dot-gmap_all_diag_df.Rd man/preddist.Rd man/mixmvnorm.Rd man/dlink-set.Rd man/dBetaBinomial.Rd man/create_decision1S_atomic.Rd man/support.Rd man/mixfit.Rd man/mixgamma.Rd man/asthma.Rd man/likelihood.Rd man/oc2S.Rd man/dot-gmap_mcmc_metadata.Rd man/Curry.Rd man/ess.Rd man/dot-gmap_draws_array.Rd man/mixstanvar.Rd man/mixnorm.Rd man/dot-gmap_extract_diag_draws_array.Rd man/knn.Rd man/plot.EM.Rd man/uniroot_int.Rd man/dot-gmap_summary.Rd man/create_decision2S_atomic.Rd man/dot-gmap_empty_draws_summary.Rd man/dot-gmap_divergence_count.Rd man/integrate_density_log.Rd man/dot-gmap_empty_draws_array.Rd man/mix.Rd man/colitis.Rd man/decision1S.Rd man/lodds.Rd man/forest_plot.Rd man/mixdiff.Rd man/RBesT-package.Rd man/BinaryExactCI.Rd man/automixfit.Rd man/decision1S_boundary.Rd man/dot-gmap_warn_no_samples.Rd man/decision2S.Rd man/mixdist3.Rd man/mixplot.Rd man/pos1S.Rd man/mixcombine.Rd man/gMAP.Rd man/transplant.Rd man/dot-gmap_extract_draws_array.Rd man/create_decision2S_2sided.Rd man/resolve_sigma_family.Rd man/integrate_density.Rd