View source: R/family.categorical.R
bratt | R Documentation |
Fits a Bradley Terry model with ties (intercept-only model) by maximum likelihood estimation.
bratt(refgp = "last", refvalue = 1, ialpha = 1, i0 = 0.01)
refgp |
Integer whose value must be from the set {1,..., |
refvalue |
Numeric. A positive value for the reference group. |
ialpha |
Initial values for the |
i0 |
Initial value for |
There are several models that extend the ordinary
Bradley Terry model to handle ties. This family function
implements one of these models. It involves M
competitors who either win or lose or tie against
each other. (If there are no draws/ties then use
brat
). The probability that Competitor
i
beats Competitor j
is \alpha_i /
(\alpha_i+\alpha_j+\alpha_0)
, where all the \alpha
s
are positive. The probability that Competitor i
ties with Competitor j
is \alpha_0 /
(\alpha_i+\alpha_j+\alpha_0)
. Loosely, the \alpha
s
can be thought of as the competitors' ‘abilities’,
and \alpha_0
is an added parameter
to model ties. For identifiability, one of the
\alpha_i
is set to a known value
refvalue
, e.g., 1. By default, this function
chooses the last competitor to have this reference value.
The data can be represented in the form of a M
by M
matrix of counts, where winners are the rows
and losers are the columns. However, this is not the
way the data should be inputted (see below).
Excluding the reference value/group, this function
chooses \log(\alpha_j)
as the first
M-1
linear predictors. The log link ensures that
the \alpha
s are positive. The last linear
predictor is \log(\alpha_0)
.
The Bradley Terry model can be fitted with covariates, e.g., a home advantage variable, but unfortunately, this lies outside the VGLM theoretical framework and therefore cannot be handled with this code.
An object of class "vglmff"
(see vglmff-class
).
The object is used by modelling functions
such as vglm
.
The function Brat
is useful for coercing
a M
by M
matrix of counts into a one-row
matrix suitable for bratt
. Diagonal elements
are skipped, and the usual S order of c(a.matrix)
of elements is used. There should be no missing values
apart from the diagonal elements of the square matrix.
The matrix should have winners as the rows, and losers
as the columns. In general, the response should be a
matrix with M(M-1)
columns.
Also, a symmetric matrix of ties should be passed into
Brat
. The diagonal of this matrix should
be all NA
s.
Only an intercept model is recommended with bratt
.
It doesn't make sense really to include covariates because
of the limited VGLM framework.
Notationally, note that the VGAM family function
brat
has M+1
contestants, while
bratt
has M
contestants.
T. W. Yee
Torsney, B. (2004). Fitting Bradley Terry models using a multiplicative algorithm. In: Antoch, J. (ed.) Proceedings in Computational Statistics COMPSTAT 2004, Physica-Verlag: Heidelberg. Pages 513–526.
brat
,
Brat
,
binomialff
.
# citation statistics: being cited is a 'win'; citing is a 'loss'
journal <- c("Biometrika", "Comm.Statist", "JASA", "JRSS-B")
mat <- matrix(c( NA, 33, 320, 284,
730, NA, 813, 276,
498, 68, NA, 325,
221, 17, 142, NA), 4, 4)
dimnames(mat) <- list(winner = journal, loser = journal)
# Add some ties. This is fictitional data.
ties <- 5 + 0 * mat
ties[2, 1] <- ties[1,2] <- 9
# Now fit the model
fit <- vglm(Brat(mat, ties) ~ 1, bratt(refgp = 1), trace = TRUE,
crit = "coef")
summary(fit)
c(0, coef(fit)) # Log-abilities (last is log(alpha0))
c(1, Coef(fit)) # Abilities (last is alpha0)
fit@misc$alpha # alpha_1,...,alpha_M
fit@misc$alpha0 # alpha_0
fitted(fit) # Probabilities of winning and tying, in awkward form
predict(fit)
(check <- InverseBrat(fitted(fit))) # Probabilities of winning
qprob <- attr(fitted(fit), "probtie") # Probabilities of a tie
qprobmat <- InverseBrat(c(qprob), NCo = nrow(ties)) # Pr(tie)
check + t(check) + qprobmat # Should be 1s in the off-diagonals
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