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biogram package

This package contains tools for extraction and analysis of various n-grams (sequences of n items) derived from biological sequences (proteins or nucleic acids). To deal with the curse of dimensionality of the n-grams, biogram uses Quick Permutation Test (QuiPT) for fast feature filtering.


biogram is available on CRAN, so installation is as simple as:


You can install the latest development version of the code using the devtools R package.

# Install devtools, if you haven't already.


For citation type:


or use: Michal Burdukiewicz, Piotr Sobczyk and Chris Lauber (2016). biogram: N-Gram Analysis of Biological Sequences. R package version 1.3.

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biogram documentation built on March 31, 2020, 5:14 p.m.