This package contains tools for extraction and analysis of various n-grams (sequences of n items) derived from biological sequences (proteins or nucleic acids). To deal with the curse of dimensionality of the n-grams, biogram uses Quick Permutation Test (QuiPT) for fast feature filtering.
biogram is available on CRAN, so installation is as simple as:
install.packages("biogram")
You can install the latest development version of the code using the devtools
R package.
# Install devtools, if you haven't already.
install.packages("devtools")
library(devtools)
install_github("michbur/biogram")
For citation type:
citation("biogram")
or use: Michal Burdukiewicz, Piotr Sobczyk and Chris Lauber (2016). biogram: N-Gram Analysis of Biological Sequences. R package version 1.3. https://cran.r-project.org/package=biogram
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.