aaprop: Normalized amino acids properties

In biogram: N-Gram Analysis of Biological Sequences

Description

Normalized (0-1) 554 amino acid properties as retreived from AAIndex database (release 9.1) enriched with contactivity of amino acids.

Format

A data frames with 20 columns and 600 rows.

Details

Following properties are included (AAIndex key: description of the property)

ANDN920101

alpha-CH chemical shifts (Andersen et al., 1992)

ARGP820101

Hydrophobicity index (Argos et al., 1982)

ARGP820102

Signal sequence helical potential (Argos et al., 1982)

ARGP820103

Membrane-buried preference parameters (Argos et al., 1982)

BEGF750101

Conformational parameter of inner helix (Beghin-Dirkx, 1975)

BEGF750102

Conformational parameter of beta-structure (Beghin-Dirkx, 1975)

BEGF750103

Conformational parameter of beta-turn (Beghin-Dirkx, 1975)

BHAR880101

Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)

BIGC670101

Residue volume (Bigelow, 1967)

BIOV880101

Information value for accessibility; average fraction 35% (Biou et al., 1988)

BIOV880102

Information value for accessibility; average fraction 23% (Biou et al., 1988)

BROC820101

Retention coefficient in TFA (Browne et al., 1982)

BROC820102

Retention coefficient in HFBA (Browne et al., 1982)

BULH740101

Transfer free energy to surface (Bull-Breese, 1974)

BULH740102

Apparent partial specific volume (Bull-Breese, 1974)

BUNA790101

alpha-NH chemical shifts (Bundi-Wuthrich, 1979)

BUNA790102

alpha-CH chemical shifts (Bundi-Wuthrich, 1979)

BUNA790103

Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)

BURA740101

Normalized frequency of alpha-helix (Burgess et al., 1974)

BURA740102

Normalized frequency of extended structure (Burgess et al., 1974)

CHAM810101

Steric parameter (Charton, 1981)

CHAM820101

Polarizability parameter (Charton-Charton, 1982)

CHAM820102

Free energy of solution in water, kcal/mole (Charton-Charton, 1982)

CHAM830101

The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)

CHAM830102

A parameter defined from the residuals obtained from the best correlation of the Chou-Fasman parameter of beta-sheet (Charton-Charton, 1983)

CHAM830103

The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)

CHAM830104

The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)

CHAM830105

The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)

CHAM830106

The number of bonds in the longest chain (Charton-Charton, 1983)

CHAM830107

A parameter of charge transfer capability (Charton-Charton, 1983)

CHAM830108

A parameter of charge transfer donor capability (Charton-Charton, 1983)

CHOC750101

Average volume of buried residue (Chothia, 1975)

CHOC760101

Residue accessible surface area in tripeptide (Chothia, 1976)

CHOC760102

Residue accessible surface area in folded protein (Chothia, 1976)

CHOC760103

Proportion of residues 95% buried (Chothia, 1976)

CHOC760104

Proportion of residues 100% buried (Chothia, 1976)

CHOP780101

Normalized frequency of beta-turn (Chou-Fasman, 1978a)

CHOP780201

Normalized frequency of alpha-helix (Chou-Fasman, 1978b)

CHOP780202

Normalized frequency of beta-sheet (Chou-Fasman, 1978b)

CHOP780203

Normalized frequency of beta-turn (Chou-Fasman, 1978b)

CHOP780204

Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)

CHOP780205

Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)

CHOP780206

Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)

CHOP780207

Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)

CHOP780208

Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)

CHOP780209

Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)

CHOP780210

Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)

CHOP780211

Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)

CHOP780212

Frequency of the 1st residue in turn (Chou-Fasman, 1978b)

CHOP780213

Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)

CHOP780214

Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)

CHOP780215

Frequency of the 4th residue in turn (Chou-Fasman, 1978b)

CHOP780216

Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)

CIDH920101

Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)

CIDH920102

Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)

CIDH920103

Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)

CIDH920104

Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)

CIDH920105

Normalized average hydrophobicity scales (Cid et al., 1992)

COHE430101

Partial specific volume (Cohn-Edsall, 1943)

CRAJ730101

Normalized frequency of middle helix (Crawford et al., 1973)

CRAJ730102

Normalized frequency of beta-sheet (Crawford et al., 1973)

CRAJ730103

Normalized frequency of turn (Crawford et al., 1973)

DAWD720101

Size (Dawson, 1972)

DAYM780101

Amino acid composition (Dayhoff et al., 1978a)

DAYM780201

Relative mutability (Dayhoff et al., 1978b)

DESM900101

Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)

DESM900102

Average membrane preference: AMP07 (Degli Esposti et al., 1990)

EISD840101

Consensus normalized hydrophobicity scale (Eisenberg, 1984)

EISD860101

Solvation free energy (Eisenberg-McLachlan, 1986)

EISD860102

Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)

EISD860103

Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)

FASG760101

Molecular weight (Fasman, 1976)

FASG760102

Melting point (Fasman, 1976)

FASG760103

Optical rotation (Fasman, 1976)

FASG760104

pK-N (Fasman, 1976)

FASG760105

pK-C (Fasman, 1976)

FAUJ830101

Hydrophobic parameter pi (Fauchere-Pliska, 1983)

FAUJ880101

Graph shape index (Fauchere et al., 1988)

FAUJ880102

Smoothed upsilon steric parameter (Fauchere et al., 1988)

FAUJ880103

Normalized van der Waals volume (Fauchere et al., 1988)

FAUJ880104

STERIMOL length of the side chain (Fauchere et al., 1988)

FAUJ880105

STERIMOL minimum width of the side chain (Fauchere et al., 1988)

FAUJ880106

STERIMOL maximum width of the side chain (Fauchere et al., 1988)

FAUJ880107

N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)

FAUJ880108

Localized electrical effect (Fauchere et al., 1988)

FAUJ880109

Number of hydrogen bond donors (Fauchere et al., 1988)

FAUJ880110

Number of full nonbonding orbitals (Fauchere et al., 1988)

FAUJ880111

Positive charge (Fauchere et al., 1988)

FAUJ880112

Negative charge (Fauchere et al., 1988)

FAUJ880113

pK-a(RCOOH) (Fauchere et al., 1988)

FINA770101

Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)

FINA910101

Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)

FINA910102

Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)

FINA910103

Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)

FINA910104

Helix termination parameter at posision j+1 (Finkelstein et al., 1991)

GARJ730101

Partition coefficient (Garel et al., 1973)

GEIM800101

Alpha-helix indices (Geisow-Roberts, 1980)

GEIM800102

Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980)

GEIM800103

Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980)

GEIM800104

Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980)

GEIM800105

Beta-strand indices (Geisow-Roberts, 1980)

GEIM800106

Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)

GEIM800107

Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980)

GEIM800108

Aperiodic indices (Geisow-Roberts, 1980)

GEIM800109

Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980)

GEIM800110

Aperiodic indices for beta-proteins (Geisow-Roberts, 1980)

GEIM800111

Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)

GOLD730101

Hydrophobicity factor (Goldsack-Chalifoux, 1973)

GOLD730102

Residue volume (Goldsack-Chalifoux, 1973)

GRAR740101

Composition (Grantham, 1974)

GRAR740102

Polarity (Grantham, 1974)

GRAR740103

Volume (Grantham, 1974)

GUYH850101

Partition energy (Guy, 1985)

HOPA770101

Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)

HOPT810101

Hydrophilicity value (Hopp-Woods, 1981)

HUTJ700101

Heat capacity (Hutchens, 1970)

HUTJ700102

Absolute entropy (Hutchens, 1970)

HUTJ700103

Entropy of formation (Hutchens, 1970)

ISOY800101

Normalized relative frequency of alpha-helix (Isogai et al., 1980)

ISOY800102

Normalized relative frequency of extended structure (Isogai et al., 1980)

ISOY800103

Normalized relative frequency of bend (Isogai et al., 1980)

ISOY800104

Normalized relative frequency of bend R (Isogai et al., 1980)

ISOY800105

Normalized relative frequency of bend S (Isogai et al., 1980)

ISOY800106

Normalized relative frequency of helix end (Isogai et al., 1980)

ISOY800107

Normalized relative frequency of double bend (Isogai et al., 1980)

ISOY800108

Normalized relative frequency of coil (Isogai et al., 1980)

JANJ780101

Average accessible surface area (Janin et al., 1978)

JANJ780102

Percentage of buried residues (Janin et al., 1978)

JANJ780103

Percentage of exposed residues (Janin et al., 1978)

JANJ790101

Ratio of buried and accessible molar fractions (Janin, 1979)

JANJ790102

Transfer free energy (Janin, 1979)

JOND750101

Hydrophobicity (Jones, 1975)

JOND750102

pK (-COOH) (Jones, 1975)

JOND920101

Relative frequency of occurrence (Jones et al., 1992)

JOND920102

Relative mutability (Jones et al., 1992)

JUKT750101

Amino acid distribution (Jukes et al., 1975)

JUNJ780101

Sequence frequency (Jungck, 1978)

KANM800101

Average relative probability of helix (Kanehisa-Tsong, 1980)

KANM800102

Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)

KANM800103

Average relative probability of inner helix (Kanehisa-Tsong, 1980)

KANM800104

Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)

KARP850101

Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)

KARP850102

Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)

KARP850103

Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)

KHAG800101

The Kerr-constant increments (Khanarian-Moore, 1980)

KLEP840101

Net charge (Klein et al., 1984)

KRIW710101

Side chain interaction parameter (Krigbaum-Rubin, 1971)

KRIW790101

Side chain interaction parameter (Krigbaum-Komoriya, 1979)

KRIW790102

Fraction of site occupied by water (Krigbaum-Komoriya, 1979)

KRIW790103

Side chain volume (Krigbaum-Komoriya, 1979)

KYTJ820101

Hydropathy index (Kyte-Doolittle, 1982)

LAWE840101

Transfer free energy, CHP/water (Lawson et al., 1984)

LEVM760101

Hydrophobic parameter (Levitt, 1976)

LEVM760102

Distance between C-alpha and centroid of side chain (Levitt, 1976)

LEVM760103

Side chain angle theta(AAR) (Levitt, 1976)

LEVM760104

Side chain torsion angle phi(AAAR) (Levitt, 1976)

LEVM760105

Radius of gyration of side chain (Levitt, 1976)

LEVM760106

van der Waals parameter R0 (Levitt, 1976)

LEVM760107

van der Waals parameter epsilon (Levitt, 1976)

LEVM780101

Normalized frequency of alpha-helix, with weights (Levitt, 1978)

LEVM780102

Normalized frequency of beta-sheet, with weights (Levitt, 1978)

LEVM780103

Normalized frequency of reverse turn, with weights (Levitt, 1978)

LEVM780104

Normalized frequency of alpha-helix, unweighted (Levitt, 1978)

LEVM780105

Normalized frequency of beta-sheet, unweighted (Levitt, 1978)

LEVM780106

Normalized frequency of reverse turn, unweighted (Levitt, 1978)

LEWP710101

Frequency of occurrence in beta-bends (Lewis et al., 1971)

LIFS790101

Conformational preference for all beta-strands (Lifson-Sander, 1979)

LIFS790102

Conformational preference for parallel beta-strands (Lifson-Sander, 1979)

LIFS790103

Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979)

MANP780101

Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978)

MAXF760101

Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)

MAXF760102

Normalized frequency of extended structure (Maxfield-Scheraga, 1976)

MAXF760103

Normalized frequency of zeta R (Maxfield-Scheraga, 1976)

MAXF760104

Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)

MAXF760105

Normalized frequency of zeta L (Maxfield-Scheraga, 1976)

MAXF760106

Normalized frequency of alpha region (Maxfield-Scheraga, 1976)

MCMT640101

Refractivity (McMeekin et al., 1964), Cited by Jones (1975)

MEEJ800101

Retention coefficient in HPLC, pH7.4 (Meek, 1980)

MEEJ800102

Retention coefficient in HPLC, pH2.1 (Meek, 1980)

MEEJ810101

Retention coefficient in NaClO4 (Meek-Rossetti, 1981)

MEEJ810102

Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981)

MEIH800101

Average reduced distance for C-alpha (Meirovitch et al., 1980)

MEIH800102

Average reduced distance for side chain (Meirovitch et al., 1980)

MEIH800103

Average side chain orientation angle (Meirovitch et al., 1980)

MIYS850101

Effective partition energy (Miyazawa-Jernigan, 1985)

NAGK730101

Normalized frequency of alpha-helix (Nagano, 1973)

NAGK730102

Normalized frequency of bata-structure (Nagano, 1973)

NAGK730103

Normalized frequency of coil (Nagano, 1973)

NAKH900101

AA composition of total proteins (Nakashima et al., 1990)

NAKH900102

SD of AA composition of total proteins (Nakashima et al., 1990)

NAKH900103

AA composition of mt-proteins (Nakashima et al., 1990)

NAKH900104

Normalized composition of mt-proteins (Nakashima et al., 1990)

NAKH900105

AA composition of mt-proteins from animal (Nakashima et al., 1990)

NAKH900106

Normalized composition from animal (Nakashima et al., 1990)

NAKH900107

AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)

NAKH900108

Normalized composition from fungi and plant (Nakashima et al., 1990)

NAKH900109

AA composition of membrane proteins (Nakashima et al., 1990)

NAKH900110

Normalized composition of membrane proteins (Nakashima et al., 1990)

NAKH900111

Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)

NAKH900112

Transmembrane regions of mt-proteins (Nakashima et al., 1990)

NAKH900113

Ratio of average and computed composition (Nakashima et al., 1990)

NAKH920101

AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920102

AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920103

AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920104

AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920105

AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920106

AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920107

AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992)

NAKH920108

AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)

NISK800101

8 A contact number (Nishikawa-Ooi, 1980)

NISK860101

14 A contact number (Nishikawa-Ooi, 1986)

NOZY710101

Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)

OOBM770101

Average non-bonded energy per atom (Oobatake-Ooi, 1977)

OOBM770102

Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)

OOBM770103

Long range non-bonded energy per atom (Oobatake-Ooi, 1977)

OOBM770104

Average non-bonded energy per residue (Oobatake-Ooi, 1977)

OOBM770105

Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)

OOBM850101

Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985)

OOBM850102

Optimized propensity to form reverse turn (Oobatake et al., 1985)

OOBM850103

Optimized transfer energy parameter (Oobatake et al., 1985)

OOBM850104

Optimized average non-bonded energy per atom (Oobatake et al., 1985)

OOBM850105

Optimized side chain interaction parameter (Oobatake et al., 1985)

PALJ810101

Normalized frequency of alpha-helix from LG (Palau et al., 1981)

PALJ810102

Normalized frequency of alpha-helix from CF (Palau et al., 1981)

PALJ810103

Normalized frequency of beta-sheet from LG (Palau et al., 1981)

PALJ810104

Normalized frequency of beta-sheet from CF (Palau et al., 1981)

PALJ810105

Normalized frequency of turn from LG (Palau et al., 1981)

PALJ810106

Normalized frequency of turn from CF (Palau et al., 1981)

PALJ810107

Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)

PALJ810108

Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)

PALJ810109

Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)

PALJ810110

Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)

PALJ810111

Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)

PALJ810112

Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)

PALJ810113

Normalized frequency of turn in all-alpha class (Palau et al., 1981)

PALJ810114

Normalized frequency of turn in all-beta class (Palau et al., 1981)

PALJ810115

Normalized frequency of turn in alpha+beta class (Palau et al., 1981)

PALJ810116

Normalized frequency of turn in alpha/beta class (Palau et al., 1981)

PARJ860101

HPLC parameter (Parker et al., 1986)

PLIV810101

Partition coefficient (Pliska et al., 1981)

PONP800101

Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980)

PONP800102

Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980)

PONP800103

Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980)

PONP800104

Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980)

PONP800105

Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980)

PONP800106

Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980)

PONP800107

Accessibility reduction ratio (Ponnuswamy et al., 1980)

PONP800108

Average number of surrounding residues (Ponnuswamy et al., 1980)

PRAM820101

Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)

PRAM820102

Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)

PRAM820103

Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)

PRAM900101

Hydrophobicity (Prabhakaran, 1990)

PRAM900102

Relative frequency in alpha-helix (Prabhakaran, 1990)

PRAM900103

Relative frequency in beta-sheet (Prabhakaran, 1990)

PRAM900104

Relative frequency in reverse-turn (Prabhakaran, 1990)

PTIO830101

Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)

PTIO830102

Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)

QIAN880101

Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988)

QIAN880102

Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988)

QIAN880103

Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988)

QIAN880104

Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)

QIAN880105

Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)

QIAN880106

Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)

QIAN880107

Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988)

QIAN880108

Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988)

QIAN880109

Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)

QIAN880110

Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988)

QIAN880111

Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988)

QIAN880112

Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988)

QIAN880113

Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988)

QIAN880114

Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988)

QIAN880115

Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988)

QIAN880116

Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)

QIAN880117

Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988)

QIAN880118

Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988)

QIAN880119

Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988)

QIAN880120

Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988)

QIAN880121

Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988)

QIAN880122

Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988)

QIAN880123

Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988)

QIAN880124

Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988)

QIAN880125

Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988)

QIAN880126

Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988)

QIAN880127

Weights for coil at the window position of -6 (Qian-Sejnowski, 1988)

QIAN880128

Weights for coil at the window position of -5 (Qian-Sejnowski, 1988)

QIAN880129

Weights for coil at the window position of -4 (Qian-Sejnowski, 1988)

QIAN880130

Weights for coil at the window position of -3 (Qian-Sejnowski, 1988)

QIAN880131

Weights for coil at the window position of -2 (Qian-Sejnowski, 1988)

QIAN880132

Weights for coil at the window position of -1 (Qian-Sejnowski, 1988)

QIAN880133

Weights for coil at the window position of 0 (Qian-Sejnowski, 1988)

QIAN880134

Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)

QIAN880135

Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)

QIAN880136

Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)

QIAN880137

Weights for coil at the window position of 4 (Qian-Sejnowski, 1988)

QIAN880138

Weights for coil at the window position of 5 (Qian-Sejnowski, 1988)

QIAN880139

Weights for coil at the window position of 6 (Qian-Sejnowski, 1988)

RACS770101

Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)

RACS770102

Average reduced distance for side chain (Rackovsky-Scheraga, 1977)

RACS770103

Side chain orientational preference (Rackovsky-Scheraga, 1977)

RACS820101

Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982)

RACS820102

Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982)

RACS820103

Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982)

RACS820104

Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)

RACS820105

Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982)

RACS820106

Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982)

RACS820107

Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982)

RACS820108

Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982)

RACS820109

Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982)

RACS820110

Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982)

RACS820111

Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982)

RACS820112

Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982)

RACS820113

Value of theta(i) (Rackovsky-Scheraga, 1982)

RACS820114

Value of theta(i-1) (Rackovsky-Scheraga, 1982)

RADA880101

Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)

RADA880102

Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)

RADA880103

Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)

RADA880104

Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)

RADA880105

Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)

RADA880106

Accessible surface area (Radzicka-Wolfenden, 1988)

RADA880107

Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)

RADA880108

Mean polarity (Radzicka-Wolfenden, 1988)

RICJ880101

Relative preference value at N" (Richardson-Richardson, 1988)

RICJ880102

Relative preference value at N' (Richardson-Richardson, 1988)

RICJ880103

Relative preference value at N-cap (Richardson-Richardson, 1988)

RICJ880104

Relative preference value at N1 (Richardson-Richardson, 1988)

RICJ880105

Relative preference value at N2 (Richardson-Richardson, 1988)

RICJ880106

Relative preference value at N3 (Richardson-Richardson, 1988)

RICJ880107

Relative preference value at N4 (Richardson-Richardson, 1988)

RICJ880108

Relative preference value at N5 (Richardson-Richardson, 1988)

RICJ880109

Relative preference value at Mid (Richardson-Richardson, 1988)

RICJ880110

Relative preference value at C5 (Richardson-Richardson, 1988)

RICJ880111

Relative preference value at C4 (Richardson-Richardson, 1988)

RICJ880112

Relative preference value at C3 (Richardson-Richardson, 1988)

RICJ880113

Relative preference value at C2 (Richardson-Richardson, 1988)

RICJ880114

Relative preference value at C1 (Richardson-Richardson, 1988)

RICJ880115

Relative preference value at C-cap (Richardson-Richardson, 1988)

RICJ880116

Relative preference value at C' (Richardson-Richardson, 1988)

RICJ880117

Relative preference value at C" (Richardson-Richardson, 1988)

ROBB760101

Information measure for alpha-helix (Robson-Suzuki, 1976)

ROBB760102

Information measure for N-terminal helix (Robson-Suzuki, 1976)

ROBB760103

Information measure for middle helix (Robson-Suzuki, 1976)

ROBB760104

Information measure for C-terminal helix (Robson-Suzuki, 1976)

ROBB760105

Information measure for extended (Robson-Suzuki, 1976)

ROBB760106

Information measure for pleated-sheet (Robson-Suzuki, 1976)

ROBB760107

Information measure for extended without H-bond (Robson-Suzuki, 1976)

ROBB760108

Information measure for turn (Robson-Suzuki, 1976)

ROBB760109

Information measure for N-terminal turn (Robson-Suzuki, 1976)

ROBB760110

Information measure for middle turn (Robson-Suzuki, 1976)

ROBB760111

Information measure for C-terminal turn (Robson-Suzuki, 1976)

ROBB760112

Information measure for coil (Robson-Suzuki, 1976)

ROBB760113

Information measure for loop (Robson-Suzuki, 1976)

ROBB790101

Hydration free energy (Robson-Osguthorpe, 1979)

ROSG850101

Mean area buried on transfer (Rose et al., 1985)

ROSG850102

Mean fractional area loss (Rose et al., 1985)

ROSM880101

Side chain hydropathy, uncorrected for solvation (Roseman, 1988)

ROSM880102

Side chain hydropathy, corrected for solvation (Roseman, 1988)

ROSM880103

Loss of Side chain hydropathy by helix formation (Roseman, 1988)

SIMZ760101

Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)

SNEP660101

Principal component I (Sneath, 1966)

SNEP660102

Principal component II (Sneath, 1966)

SNEP660103

Principal component III (Sneath, 1966)

SNEP660104

Principal component IV (Sneath, 1966)

SUEM840101

Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)

SUEM840102

Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)

SWER830101

Optimal matching hydrophobicity (Sweet-Eisenberg, 1983)

TANS770101

Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)

TANS770102

Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)

TANS770103

Normalized frequency of extended structure (Tanaka-Scheraga, 1977)

TANS770104

Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)

TANS770105

Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)

TANS770106

Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)

TANS770107

Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)

TANS770108

Normalized frequency of zeta R (Tanaka-Scheraga, 1977)

TANS770109

Normalized frequency of coil (Tanaka-Scheraga, 1977)

TANS770110

Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)

VASM830101

Relative population of conformational state A (Vasquez et al., 1983)

VASM830102

Relative population of conformational state C (Vasquez et al., 1983)

VASM830103

Relative population of conformational state E (Vasquez et al., 1983)

VELV850101

Electron-ion interaction potential (Veljkovic et al., 1985)

VENT840101

Bitterness (Venanzi, 1984)

VHEG790101

Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979)

WARP780101

Average interactions per side chain atom (Warme-Morgan, 1978)

WEBA780101

RF value in high salt chromatography (Weber-Lacey, 1978)

WERD780101

Propensity to be buried inside (Wertz-Scheraga, 1978)

WERD780102

Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)

WERD780103

Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)

WERD780104

Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)

WOEC730101

Polar requirement (Woese, 1973)

WOLR810101

Hydration potential (Wolfenden et al., 1981)

WOLS870101

Principal property value z1 (Wold et al., 1987)

WOLS870102

Principal property value z2 (Wold et al., 1987)

WOLS870103

Principal property value z3 (Wold et al., 1987)

YUTK870101

Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)

YUTK870102

Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

YUTK870103

Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)

YUTK870104

Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)

ZASB820101

Dependence of partition coefficient on ionic strength (Zaslavsky et al., 1982)

ZIMJ680101

Hydrophobicity (Zimmerman et al., 1968)

ZIMJ680102

Bulkiness (Zimmerman et al., 1968)

ZIMJ680103

Polarity (Zimmerman et al., 1968)

ZIMJ680104

Isoelectric point (Zimmerman et al., 1968)

ZIMJ680105

RF rank (Zimmerman et al., 1968)

AURR980101

Normalized positional residue frequency at helix termini N4'(Aurora-Rose, 1998)

AURR980102

Normalized positional residue frequency at helix termini N"' (Aurora-Rose, 1998)

AURR980103

Normalized positional residue frequency at helix termini N" (Aurora-Rose, 1998)

AURR980104

Normalized positional residue frequency at helix termini N'(Aurora-Rose, 1998)

AURR980105

Normalized positional residue frequency at helix termini Nc (Aurora-Rose, 1998)

AURR980106

Normalized positional residue frequency at helix termini N1 (Aurora-Rose, 1998)

AURR980107

Normalized positional residue frequency at helix termini N2 (Aurora-Rose, 1998)

AURR980108

Normalized positional residue frequency at helix termini N3 (Aurora-Rose, 1998)

AURR980109

Normalized positional residue frequency at helix termini N4 (Aurora-Rose, 1998)

AURR980110

Normalized positional residue frequency at helix termini N5 (Aurora-Rose, 1998)

AURR980111

Normalized positional residue frequency at helix termini C5 (Aurora-Rose, 1998)

AURR980112

Normalized positional residue frequency at helix termini C4 (Aurora-Rose, 1998)

AURR980113

Normalized positional residue frequency at helix termini C3 (Aurora-Rose, 1998)

AURR980114

Normalized positional residue frequency at helix termini C2 (Aurora-Rose, 1998)

AURR980115

Normalized positional residue frequency at helix termini C1 (Aurora-Rose, 1998)

AURR980116

Normalized positional residue frequency at helix termini Cc (Aurora-Rose, 1998)

AURR980117

Normalized positional residue frequency at helix termini C' (Aurora-Rose, 1998)

AURR980118

Normalized positional residue frequency at helix termini C" (Aurora-Rose, 1998)

AURR980119

Normalized positional residue frequency at helix termini C"' (Aurora-Rose, 1998)

AURR980120

Normalized positional residue frequency at helix termini C4' (Aurora-Rose, 1998)

ONEK900101

Delta G values for the peptides extrapolated to 0 M urea (O'Neil-DeGrado, 1990)

ONEK900102

Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)

VINM940101

Normalized flexibility parameters (B-values), average (Vihinen et al., 1994)

VINM940102

Normalized flexibility parameters (B-values) for each residue surrounded by none rigid neighbours (Vihinen et al., 1994)

VINM940103

Normalized flexibility parameters (B-values) for each residue surrounded by one rigid neighbours (Vihinen et al., 1994)

VINM940104

Normalized flexibility parameters (B-values) for each residue surrounded by two rigid neighbours (Vihinen et al., 1994)

MUNV940101

Free energy in alpha-helical conformation (Munoz-Serrano, 1994)

MUNV940102

Free energy in alpha-helical region (Munoz-Serrano, 1994)

MUNV940103

Free energy in beta-strand conformation (Munoz-Serrano, 1994)

MUNV940104

Free energy in beta-strand region (Munoz-Serrano, 1994)

MUNV940105

Free energy in beta-strand region (Munoz-Serrano, 1994)

WIMW960101

Free energies of transfer of AcWl-X-LL peptides from bilayer interface to water (Wimley-White, 1996)

KIMC930101

Thermodynamic beta sheet propensity (Kim-Berg, 1993)

MONM990101

Turn propensity scale for transmembrane helices (Monne et al., 1999)

BLAM930101

Alpha helix propensity of position 44 in T4 lysozyme (Blaber et al., 1993)

PARS000101

p-Values of mesophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)

PARS000102

p-Values of thermophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)

KUMS000101

Distribution of amino acid residues in the 18 non-redundant families of thermophilic proteins (Kumar et al., 2000)

KUMS000102

Distribution of amino acid residues in the 18 non-redundant families of mesophilic proteins (Kumar et al., 2000)

KUMS000103

Distribution of amino acid residues in the alpha-helices in thermophilic proteins (Kumar et al., 2000)

KUMS000104

Distribution of amino acid residues in the alpha-helices in mesophilic proteins (Kumar et al., 2000)

TAKK010101

Side-chain contribution to protein stability (kJ/mol) (Takano-Yutani, 2001)

FODM020101

Propensity of amino acids within pi-helices (Fodje-Al-Karadaghi, 2002)

NADH010101

Hydropathy scale based on self-information values in the two-state model (5% accessibility) (Naderi-Manesh et al., 2001)

NADH010102

Hydropathy scale based on self-information values in the two-state model (9% accessibility) (Naderi-Manesh et al., 2001)

NADH010103

Hydropathy scale based on self-information values in the two-state model (16% accessibility) (Naderi-Manesh et al., 2001)

NADH010104

Hydropathy scale based on self-information values in the two-state model (20% accessibility) (Naderi-Manesh et al., 2001)

NADH010105

Hydropathy scale based on self-information values in the two-state model (25% accessibility) (Naderi-Manesh et al., 2001)

NADH010106

Hydropathy scale based on self-information values in the two-state model (36% accessibility) (Naderi-Manesh et al., 2001)

NADH010107

Hydropathy scale based on self-information values in the two-state model (50% accessibility) (Naderi-Manesh et al., 2001)

MONM990201

Averaged turn propensities in a transmembrane helix (Monne et al., 1999)

KOEP990101

Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)

KOEP990102

Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)

CEDJ970101

Composition of amino acids in extracellular proteins (percent) (Cedano et al., 1997)

CEDJ970102

Composition of amino acids in anchored proteins (percent) (Cedano et al., 1997)

CEDJ970103

Composition of amino acids in membrane proteins (percent) (Cedano et al., 1997)

CEDJ970104

Composition of amino acids in intracellular proteins (percent) (Cedano et al., 1997)

CEDJ970105

Composition of amino acids in nuclear proteins (percent) (Cedano et al., 1997)

FUKS010101

Surface composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010102

Surface composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010103

Surface composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010104

Surface composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)

FUKS010105

Interior composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010106

Interior composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010107

Interior composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010108

Interior composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)

FUKS010109

Entire chain composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010110

Entire chain composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010111

Entire chain composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

FUKS010112

Entire chain compositino of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)

AVBF000101

Screening coefficients gamma, local (Avbelj, 2000)

AVBF000102

Screening coefficients gamma, non-local (Avbelj, 2000)

AVBF000103

Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)

AVBF000104

Slopes tripeptides, LD VFF neutral (Avbelj, 2000)

AVBF000105

Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)

AVBF000106

Slopes tripeptide FDPB VFF all (Avbelj, 2000)

AVBF000107

Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)

AVBF000108

Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)

AVBF000109

Slopes proteins, FDPB VFF neutral (Avbelj, 2000)

YANJ020101

Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)

MITS020101

Amphiphilicity index (Mitaku et al., 2002)

TSAJ990101

Volumes including the crystallographic waters using the ProtOr (Tsai et al., 1999)

TSAJ990102

Volumes not including the crystallographic waters using the ProtOr (Tsai et al., 1999)

COSI940101

Electron-ion interaction potential values (Cosic, 1994)

PONP930101

Hydrophobicity scales (Ponnuswamy, 1993)

WILM950101

Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

WILM950102

Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

WILM950103

Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)

WILM950104

Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995)

KUHL950101

Hydrophilicity scale (Kuhn et al., 1995)

GUOD860101

Retention coefficient at pH 2 (Guo et al., 1986)

JURD980101

Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)

BASU050101

Interactivity scale obtained from the contact matrix (Bastolla et al., 2005)

BASU050102

Interactivity scale obtained by maximizing the mean of correlation coefficient over single-domain globular proteins (Bastolla et al., 2005)

BASU050103

Interactivity scale obtained by maximizing the mean of correlation coefficient over pairs of sequences sharing the TIM barrel fold (Bastolla et al., 2005)

SUYM030101

Linker propensity index (Suyama-Ohara, 2003)

PUNT030101

Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases (Punta-Maritan, 2003)

PUNT030102

Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo databases (Punta-Maritan, 2003)

GEOR030101

Linker propensity from all dataset (George-Heringa, 2003)

GEOR030102

Linker propensity from 1-linker dataset (George-Heringa, 2003)

GEOR030103

Linker propensity from 2-linker dataset (George-Heringa, 2003)

GEOR030104

Linker propensity from 3-linker dataset (George-Heringa, 2003)

GEOR030105

Linker propensity from small dataset (linker length is less than six residues) (George-Heringa, 2003)

GEOR030106

Linker propensity from medium dataset (linker length is between six and 14 residues) (George-Heringa, 2003)

GEOR030107

Linker propensity from long dataset (linker length is greater than 14 residues) (George-Heringa, 2003)

GEOR030108

Linker propensity from helical (annotated by DSSP) dataset (George-Heringa, 2003)

GEOR030109

Linker propensity from non-helical (annotated by DSSP) dataset (George-Heringa, 2003)

ZHOH040101

The stability scale from the knowledge-based atom-atom potential (Zhou-Zhou, 2004)

ZHOH040102

The relative stability scale extracted from mutation experiments (Zhou-Zhou, 2004)

ZHOH040103

Buriability (Zhou-Zhou, 2004)

BAEK050101

Linker index (Bae et al., 2005)

HARY940101

Mean volumes of residues buried in protein interiors (Harpaz et al., 1994)

PONJ960101

Average volumes of residues (Pontius et al., 1996)

DIGM050101

Hydrostatic pressure asymmetry index, PAI (Di Giulio, 2005)

WOLR790101

Hydrophobicity index (Wolfenden et al., 1979)

OLSK800101

Average internal preferences (Olsen, 1980)

KIDA850101

Hydrophobicity-related index (Kidera et al., 1985)

GUYH850102

Apparent partition energies calculated from Wertz-Scheraga index (Guy, 1985)

GUYH850103

Apparent partition energies calculated from Robson-Osguthorpe index (Guy, 1985)

GUYH850104

Apparent partition energies calculated from Janin index (Guy, 1985)

GUYH850105

Apparent partition energies calculated from Chothia index (Guy, 1985)

ROSM880104

Hydropathies of amino acid side chains, neutral form (Roseman, 1988)

ROSM880105

Hydropathies of amino acid side chains, pi-values in pH 7.0 (Roseman, 1988)

JACR890101

Weights from the IFH scale (Jacobs-White, 1989)

COWR900101

Hydrophobicity index, 3.0 pH (Cowan-Whittaker, 1990)

BLAS910101

Scaled side chain hydrophobicity values (Black-Mould, 1991)

CASG920101

Hydrophobicity scale from native protein structures (Casari-Sippl, 1992)

CORJ870101

NNEIG index (Cornette et al., 1987)

CORJ870102

SWEIG index (Cornette et al., 1987)

CORJ870103

PRIFT index (Cornette et al., 1987)

CORJ870104

PRILS index (Cornette et al., 1987)

CORJ870105

ALTFT index (Cornette et al., 1987)

CORJ870106

ALTLS index (Cornette et al., 1987)

CORJ870107

TOTFT index (Cornette et al., 1987)

CORJ870108

TOTLS index (Cornette et al., 1987)

MIYS990101

Relative partition energies derived by the Bethe approximation (Miyazawa-Jernigan, 1999)

MIYS990102

Optimized relative partition energies - method A (Miyazawa-Jernigan, 1999)

MIYS990103

Optimized relative partition energies - method B (Miyazawa-Jernigan, 1999)

MIYS990104

Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999)

MIYS990105

Optimized relative partition energies - method D (Miyazawa-Jernigan, 1999)

ENGD860101

Hydrophobicity index (Engelman et al., 1986)

FASG890101

Hydrophobicity index (Fasman, 1989)

K6.5

Values of Wc in proteins from class Beta, cutoff 6 A, separation 5 (Wozniak, 2014)

K8.5

Values of Wc in proteins from class Beta, cutoff 8 A, separation 5 (Wozniak, 2014)

K12.5

Values of Wc in proteins from class Beta, cutoff 12 A, separation 5 (Wozniak, 2014)

K6.15

Values of Wc in proteins from class Beta, cutoff 6 A, separation 15 (Wozniak, 2014)

K8.15

Values of Wc in proteins from class Beta, cutoff 8 A, separation 15 (Wozniak, 2014)

K12.15

Values of Wc in proteins from class Beta, cutoff 12 A, separation 15 (Wozniak, 2014)

Source

AAIndex database.

References

Kawashima, S. and Kanehisa, M. (2000) AAindex: amino acid index database. Nucleic Acids Res., 28:374.

Wozniak, P. and Kotulska M. (2014) Characteristics of protein residue-residue contacts and their application in contact prediction. 20(11):2497

Examples

data(aaprop)

biogram documentation built on March 31, 2020, 5:14 p.m.