Description Usage Arguments Value Note See Also Examples
'Regenerates' amino acid or nucleic sequence written in a simplified alphabet by converting groups to regular expression.
encoding of elements: list of groups to which elements of sequence should be aggregated. Must have unique names.
character string representing a POSIX regular expression.
_) will be converted to any possible character from the alphabet
(nucleotides or amino acids).
degenerate to easily convert information stored in biological sequences from
letters to numbers.
calc_ed to calculate distance between simplified alphabets.
regenerate("ssw", list(w = c(1, 4), s = c(2, 3)))
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