degenerate_ngrams: Degenerate n-grams

In biogram: N-Gram Analysis of Biological Sequences

Description

'Degenerates' n-grams by aggregating amino acid or nucleotide elements into bigger groups.

Usage

degenerate_ngrams(x, element_groups, binarize = FALSE)

Arguments

x	object containing n-grams.
element_groups	encoding of elements: list of groups to which elements of n-grams should be aggregated. Must have unique names.
binarize	logical indicating if n-grams should be binarized

Value

A character vector or matrix (if input is a matrix) containing degenerated n-grams.

biogram documentation built on March 31, 2020, 5:14 p.m.