fast_crosstable: 2d cross-tabulation

In biogram: N-Gram Analysis of Biological Sequences

Description

Quickly cross-tabulates two binary vectors.

Usage

fast_crosstable(target, len_target, pos_target, feature)

Arguments

target	target.
len_target	length of the target vector.
pos_target	number of positive cases in the target vector.
feature	feature vector.

Details

Input looks odd, but the function was build to be fast subroutine of calc_ig, which works on many features but only one target.

Value

a vector of length four:

1. target +, feature+

2. target +, feature-

3. target -, feature+

4. target -, feature-

Note

Binary vector means a numeric vector with 0 or 1.

Examples

tar <- sample(0L:1, 100, replace = TRUE)
feat <- sample(0L:1, 100, replace = TRUE)
fast_crosstable(tar, length(tar), sum(tar),  feat)

biogram documentation built on March 31, 2020, 5:14 p.m.