Files in biogram
N-Gram Analysis of Biological Sequences
CHANGELOG
MD5
README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
data/human_cleave.rda
data/aaprop.rda
R/ngrams.R
R/indices_and_positions.R
R/create_encoding.R
R/generate_encodings_dist_1.r
R/add_remove_ngrams.R
R/calc_ed.R
R/calc_si.R
R/count_specified.R
R/data_manipulation.R
R/feature_test_class.R
R/criterion_distribution.R
R/chi_square.R
R/information_gain.R
R/kl_divergence.R
R/read_fasta.R
R/is_ngram.R
R/position_ngrams.R
R/construct_ngrams.R
R/distr_crit.R
R/utilities.R
R/seq2matrix.R
R/aaprop.R
R/cluster_reg_exp.R
R/count_multigrams.R
R/test_features.R
R/criterions.R
R/degenerate.R
R/write_enc.R
R/human_cleave.R
R/generate_sequence.R
R/biogram.R
R/ngram_coding.R
R/table_ngrams.R
R/simplify.R
R/count_ngrams.R
R/regenerate.R
R/region.R
vignettes/biogram_pub.bib
vignettes/overview.Rmd
man/human_cleave.Rd
man/generate_sequence.Rd
man/calc_cs.Rd
man/seq2ngrams.Rd
man/calc_si.Rd
man/construct_ngrams.Rd
man/calc_criterion.Rd
man/degenerate_ngrams.Rd
man/validate_encoding.Rd
man/decode_ngrams.Rd
man/count_total.Rd
man/generate_single_unigram.Rd
man/print.feature_test.Rd
man/test_features.Rd
man/code_ngrams.Rd
man/aaprop.Rd
man/count_ngrams.Rd
man/get_ngrams_ind.Rd
man/feature_test.Rd
man/count_multigrams.Rd
man/criterion_distribution.Rd
man/calc_ed.Rd
man/cut.feature_test.Rd
man/count_specified.Rd
man/plot.criterion_distribution.Rd
man/fast_crosstable.Rd
man/as.data.frame.feature_test.Rd
man/table_ngrams.Rd
man/cluster_reg_exp.Rd
man/write_encoding.Rd
man/regional_param.Rd
man/generate_unigrams.Rd
man/list2matrix.Rd
man/encoding2df.Rd
man/add_1grams.Rd
man/degenerate.Rd
man/create_encoding.Rd
man/l2n.Rd
man/check_criterion.Rd
man/create_feature_target.Rd
man/simple2full.Rd
man/create_ngrams.Rd
man/read_fasta.Rd
man/full2simple.Rd
man/summary.feature_test.Rd
man/calc_ig.Rd
man/calc_pi.Rd
man/biogram-package.Rd
man/ngrams2df.Rd
man/regenerate.Rd
man/distr_crit.Rd
man/binarize.Rd
man/write_fasta.Rd
man/calc_kl.Rd
man/n2l.Rd
man/is_ngram.Rd
man/position_ngrams.Rd
man/gap_ngrams.Rd
man/generate_single_region.Rd
tests/test-all.R
tests/testthat/test_position_ngrams.R
tests/testthat/test_seq2grams.R
tests/testthat/test_get_ngrams_pos.R
tests/testthat/test_generate_encodings_dist_1.r
tests/testthat/test_create_ngrams.R
tests/testthat/test_count_ngrams.R
tests/testthat/test_quipt_consistency.R
tests/testthat/test_is_ngram.R
tests/testthat/test_crosstable.R
tests/testthat/test_table_ngrams.R
tests/testthat/test_calc_ed.R
inst/CITATION
inst/doc/overview.html
inst/doc/overview.Rmd
inst/doc/overview.R
