Man pages for biogram
N-Gram Analysis of Biological Sequences

aapropNormalized amino acids properties
add_1gramsAdd 1-grams feature_test object to a data frame
biogram-packagebiogram - analysis of biological sequences using n-grams
calc_criterionCalculate value of criterion
calc_csCalculate Chi-squared-based measure
calc_edCalculate encoding distance
calc_igCalculate IG for single feature
calc_klCalculate KL divergence of features
calc_piCalculate partition index
calc_siCompute similarity index
cluster_reg_expClustering of sequences based on regular expression
code_ngramsCode n-grams
construct_ngramsConstruct and filter n-grams
count_multigramsDetect and count multiple n-grams in sequences
count_ngramsCount n-grams in sequences
count_specifiedCount specified n-grams
count_totalCount total number of n-grams
create_encodingCreate encoding
create_feature_targetCreate feature according to given contingency matrix
create_ngramsGet all possible n-Grams
criterion_distributioncriterion_distribution class
cut.feature_testCategorize tested features
decode_ngramsDecode n-grams
degenerateDegenerate protein sequence
distr_critCompute criterion distribution
encoding2dfConvert encoding to data frame
fast_crosstableVery fast 2d cross-tabulation
feature_testfeature_test class
gap_ngramsGap n-grams
get_ngrams_indGet indices of n-grams
human_cleaveHuman signal peptides cleavage sites
is_ngramValidate n-gram
l2nConvert letters to numbers
list2matrixConvert list of sequences to matrix
n2lConvert numbers to letters
ngrams2dfn-grams to data frame
plot.criterion_distributionPlot criterion distribution
position_ngramsPosition n-grams
print.feature_testPrint tested features
seq2ngramsExtract n-grams from sequence
summary.feature_testSummarize tested features
table_ngramsTabulate n-grams
test_featuresPermutation test for feature selection
validate_encodingValidate encoding
biogram documentation built on May 2, 2019, 2:50 p.m.