Files in brms

Bayesian Regression Models using 'Stan'

NEWS.md README.md R/stan-helpers.R R/brmsframe.R R/ggplot-themes.R R/bayes_R2.R R/projpred.R R/data-response.R R/predictive_error.R R/posterior_predict.R R/data-helpers.R R/summary.R R/predictor.R R/datasets.R R/pp_check.R R/model_weights.R R/priors.R R/posterior_epred.R R/exclude_terms.R R/standata.R R/kfold.R R/exclude_pars.R R/reloo.R R/emmeans.R R/families.R R/posterior_samples.R R/launch_shinystan.R R/numeric-helpers.R R/conditional_smooths.R R/stan-prior.R R/formula-cs.R R/hypothesis.R R/rename_pars.R R/posterior.R R/prior_draws.R R/brm.R R/brm_multiple.R R/formula-re.R R/backends.R R/plot.R R/diagnostics.R R/misc.R R/update.R R/stan-predictor.R R/formula-sm.R R/restructure.R R/loo_predict.R R/prepare_predictions.R R/family-lists.R R/log_lik.R R/formula-gp.R R/stancode.R R/brmsfit-methods.R R/conditional_effects.R R/pp_mixture.R R/brms-package.R R/stan-response.R R/lsp.R R/loo_moment_match.R R/zzz.R R/brmsformula.R R/loo.R R/brmsfit-helpers.R R/distributions.R R/brmsfit-class.R R/data-predictor.R R/loo_subsample.R R/bridgesampling.R R/stanvars.R R/brmsterms.R R/formula-ad.R R/priorsense.R R/stan-likelihood.R R/formula-ac.R R/posterior_smooths.R R/formula-sp.R R/autocor.R inst/doc/brms_distreg.Rmd inst/doc/brms_phylogenetics.R inst/doc/brms_customfamilies.R inst/doc/brms_threading.Rmd inst/doc/brms_distreg.R inst/doc/brms_multivariate.R inst/doc/brms_multilevel.pdf inst/doc/brms_monotonic.Rmd inst/doc/brms_phylogenetics.Rmd inst/doc/brms_customfamilies.Rmd inst/doc/brms_nonlinear.Rmd inst/doc/brms_multivariate.Rmd inst/doc/brms_monotonic.R inst/doc/brms_nonlinear.R inst/doc/brms_threading.R inst/doc/brms_missings.Rmd inst/doc/brms_families.Rmd inst/doc/brms_overview.pdf inst/doc/brms_missings.R tests/testthat.R tests/testthat/tests.rename_pars.R tests/testthat/tests.log_lik.R tests/testthat/tests.distributions.R tests/testthat/tests.posterior_epred.R tests/testthat/tests.read_csv_as_stanfit.R tests/testthat/tests.priors.R tests/testthat/tests.emmeans.R tests/testthat/tests.families.R tests/testthat/tests.exclude_pars.R tests/testthat/tests.standata.R tests/testthat/tests.brmsterms.R tests/testthat/tests.stan_functions.R tests/testthat/tests.brmsfit-helpers.R tests/testthat/tests.data-helpers.R tests/testthat/tests.stancode.R tests/testthat/tests.restructure.R tests/testthat/tests.posterior_predict.R tests/testthat/tests.brm.R tests/testthat/tests.misc.R tests/testthat/tests.brmsformula.R tests/testthat/tests.brmsfit-methods.R tests/testthat/tests.priorsense.R tests/testthat/helpers/link_categorical_ch.R tests/testthat/helpers/inv_link_ordinal_ch.R tests/testthat/helpers/simopts_catlike.R tests/testthat/helpers/simopts_catlike_oneobs.R tests/testthat/helpers/link_ordinal_ch.R tests/testthat/helpers/inv_link_categorical_ch.R tests/testthat/helpers/insert_refcat_ch.R vignettes/flowchart.pdf vignettes/brms_distreg.Rmd vignettes/ppc_mm1.pdf vignettes/me_loss1_year.pdf vignettes/brms_threading.Rmd vignettes/brms_monotonic.Rmd vignettes/brms_phylogenetics.Rmd vignettes/me_rent2.pdf vignettes/brms_customfamilies.Rmd vignettes/brms_nonlinear.Rmd vignettes/me_zinb1.pdf vignettes/brms_multivariate.Rmd vignettes/me_loss1.pdf vignettes/brms_missings.Rmd vignettes/me_rent3.pdf vignettes/brms_families.Rmd vignettes/kidney_conditional_effects.pdf vignettes/kidney_plot.pdf vignettes/inhaler_plot.pdf vignettes/me_rent1.pdf man/log_lik.brmsfit.Rd man/cor_ma.Rd man/posterior_table.Rd man/mcmc_plot.brmsfit.Rd man/brm_multiple.Rd man/control_params.Rd man/pp_mixture.brmsfit.Rd man/posterior_interval.brmsfit.Rd man/diagnostic-quantities.Rd man/reloo.brmsfit.Rd man/launch_shinystan.brmsfit.Rd man/posterior_average.brmsfit.Rd man/cor_arma.Rd man/stancode.Rd man/hypothesis.brmsfit.Rd man/make_conditions.Rd man/LogisticNormal.Rd man/standata.default.Rd man/ngrps.brmsfit.Rd man/read_csv_as_stanfit.Rd man/nsamples.brmsfit.Rd man/posterior_linpred.brmsfit.Rd man/ZeroInflated.Rd man/gp.Rd man/is.brmsfit_multiple.Rd man/stancode.default.Rd man/emmeans-brms-helpers.Rd man/ExGaussian.Rd man/brmsfit-class.Rd man/summary.brmsfit.Rd man/cs.Rd man/restructure.Rd man/Hurdle.Rd man/cor_arr.Rd man/prior_summary.brmsfit.Rd man/fcor.Rd man/prior_draws.brmsfit.Rd man/autocor.brmsfit.Rd man/brmsfamily.Rd man/add_criterion.Rd man/validate_newdata.Rd man/cor_sar.Rd man/rows2labels.Rd man/Frechet.Rd man/update_adterms.Rd man/cor_fixed.Rd man/pairs.brmsfit.Rd man/combine_models.Rd man/mmc.Rd man/is.brmsformula.Rd man/vcov.brmsfit.Rd man/mvbrmsformula.Rd man/coef.brmsfit.Rd man/default_prior.default.Rd man/compare_ic.Rd man/s.Rd man/plot.brmsfit.Rd man/density_ratio.Rd man/SkewNormal.Rd man/epilepsy.Rd man/posterior_predict.brmsfit.Rd man/mvbind.Rd man/gr.Rd man/brmsformula-helpers.Rd man/inv_logit_scaled.Rd man/R2D2.Rd man/custom_family.Rd man/rename_pars.Rd man/draws-index-brms.Rd man/Dirichlet.Rd man/get_y.Rd man/kfold_predict.Rd man/model_weights.brmsfit.Rd man/predictive_interval.brmsfit.Rd man/theme_default.Rd man/save_pars.Rd man/posterior_epred.brmsfit.Rd man/as.brmsprior.Rd man/cosy.Rd man/family.brmsfit.Rd man/print.brmsprior.Rd man/predict.brmsfit.Rd man/recompile_model.Rd man/default_prior.Rd man/residuals.brmsfit.Rd man/AsymLaplace.Rd man/ar.Rd man/fitted.brmsfit.Rd man/print.brmsfit.Rd man/InvGaussian.Rd man/data_response.Rd man/get_refmodel.brmsfit.Rd man/arma.Rd man/brmshypothesis.Rd man/MultiNormal.Rd man/GenExtremeValue.Rd man/brmsfit_needs_refit.Rd man/draws-brms.Rd man/is.cor_brms.Rd man/posterior_smooths.brmsfit.Rd man/Shifted_Lognormal.Rd man/car.Rd man/psis.brmsfit.Rd man/Wiener.Rd man/restructure.brmsfit.Rd man/inhaler.Rd man/update.brmsfit_multiple.Rd man/VonMises.Rd man/loo_R2.brmsfit.Rd man/standata.brmsfit.Rd man/validate_prior.Rd man/expose_functions.brmsfit.Rd man/is.brmsfit.Rd man/lasso.Rd man/predictive_error.brmsfit.Rd man/threading.Rd man/as.mcmc.brmsfit.Rd man/loo.brmsfit.Rd man/mi.Rd man/brmsformula.Rd man/posterior_samples.brmsfit.Rd man/cor_bsts.Rd man/brm.Rd man/do_call.Rd man/fixef.brmsfit.Rd man/sar.Rd man/MultiStudentT.Rd man/prepare_predictions.Rd man/horseshoe.Rd man/constant.Rd man/theme_black.Rd man/cor_car.Rd man/brmsterms.Rd man/cor_cosy.Rd man/mixture.Rd man/mm.Rd man/cor_ar.Rd man/is.brmsterms.Rd man/BetaBinomial.Rd man/unstr.Rd man/cor_brms.Rd man/kidney.Rd man/logm1.Rd man/stanvar.Rd man/bridge_sampler.brmsfit.Rd man/is.brmsprior.Rd man/loo_model_weights.brmsfit.Rd man/data_predictor.Rd man/loo_predict.brmsfit.Rd man/get_dpar.Rd man/stancode.brmsfit.Rd man/parnames.Rd man/expp1.Rd man/logit_scaled.Rd man/kfold.brmsfit.Rd man/loo_subsample.brmsfit.Rd man/loo_moment_match.brmsfit.Rd man/bayes_R2.brmsfit.Rd man/ranef.brmsfit.Rd man/add_ic.Rd man/autocor-terms.Rd man/pp_check.brmsfit.Rd man/loss.Rd man/waic.brmsfit.Rd man/posterior_summary.Rd man/post_prob.brmsfit.Rd man/set_prior.Rd man/conditional_effects.brmsfit.Rd man/brms-package.Rd man/update.brmsfit.Rd man/bayes_factor.brmsfit.Rd man/pp_average.brmsfit.Rd man/as.data.frame.brmsfit.Rd man/me.Rd man/is.mvbrmsterms.Rd man/addition-terms.Rd man/create_priorsense_data.brmsfit.Rd man/ma.Rd man/conditional_smooths.brmsfit.Rd man/opencl.Rd man/loo_compare.brmsfit.Rd man/mo.Rd man/add_rstan_model.Rd man/VarCorr.brmsfit.Rd man/StudentT.Rd man/is.mvbrmsformula.Rd man/standata.Rd