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B Cell Receptor Phylogenetics Toolkit

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TimeTrees: Example Ig lineage trees sampled over time.

TimeTrees: Example Ig lineage trees sampled over time.
In dowser: B Cell Receptor Phylogenetics Toolkit

TimeTreesR Documentation

Example Ig lineage trees sampled over time.

Description

Same as ExampleClones but with timepoint as a trait value

Usage

TimeTrees

Format

A tibble of airrClone and phylo objects output by getTrees.

  • clone_id: Clonal cluster

  • data: List of airrClone objects

  • seqs: Number of sequences

  • trees: List of phylo objects

See Also

TimeTrees


dowser documentation built on May 29, 2024, 3:06 a.m.

Related to TimeTrees in dowser...

dowser index
Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences

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