TimeTrees: Example Ig lineage trees sampled over time.
In dowser: B Cell Receptor Phylogenetics Toolkit

TimeTrees

R Documentation

Example Ig lineage trees sampled over time.

Description

Same as ExampleClones but with timepoint as a trait value

Usage

TimeTrees

Format

A tibble of airrClone and phylo objects output by getTrees.

clone_id: Clonal cluster
data: List of airrClone objects
seqs: Number of sequences
trees: List of phylo objects

See Also

TimeTrees

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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