readModelFile: Read in a parsimony model file
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/TreeFunctions.R

readModelFile

R Documentation

Read in a parsimony model file

Description

readModelFile Filler

Usage

readModelFile(file, useambig = FALSE)

Arguments

`file`	parsimony model file.
`useambig`	use ambiguous naming as specified in the file?

Value

A named vector containing the states of the model

See Also

makeModelFile, findSwitches, getTrees

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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