readTreesJSON: 'readTreesJSON' Experimental. Read trees from JSON/AIRR...

In dowser: B Cell Receptor Phylogenetics Toolkit

readTreesJSON Experimental. Read trees from JSON/AIRR format from Dowser

Description

readTreesJSON Experimental. Read trees from JSON/AIRR format from Dowser

Usage

readTreesJSON(
  file,
  heavy = "IGH",
  light = c("IGK", "IGL"),
  verbose = TRUE,
  edge_tol = 1e-08,
  nproc = 1
)

Arguments

file	.json file
heavy	name of heavy chain locus
light	names of light chain loci
verbose	how much info to print
edge_tol	tolerance for branch length checks (if check=TRUE)
nproc	number of cores to use (parallelizes by clone)

Details

Reads files written by writeTreesJSON, including trees built with any getTrees build option.

dowser documentation built on Aug. 20, 2026, 5:06 p.m.