rerootTree: Reroot phylogenetic tree to have its germline sequence at a...
In dowser: B Cell Receptor Phylogenetics Toolkit
View source: R/TreeFunctions.R
rerootTree R Documentation
Reroot phylogenetic tree to have its germline sequence at a zero-length branch
to a node which is the direct ancestor of the tree's UCA. Assigns uca
to be the ancestral node to the tree's germline sequence, as germid as
the tree's germline sequence ID.
Description
Reroot phylogenetic tree to have its germline sequence at a zero-length branch
to a node which is the direct ancestor of the tree's UCA. Assigns uca
to be the ancestral node to the tree's germline sequence, as germid as
the tree's germline sequence ID.
Usage
rerootTree(tree, germline, min = 0.001, verbose = 1)
Arguments
tree
An ape phylo object
germline
ID of the tree's predicted germline sequence
min
Maximum allowed branch length from germline to root
verbose
amount of rubbish to print
Value
phylo object rooted at the specified germline
dowser documentation built on May 29, 2024, 3:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/TreeFunctions.R
| rerootTree | R Documentation |
Reroot phylogenetic tree to have its germline sequence at a zero-length branch
to a node which is the direct ancestor of the tree's UCA. Assigns uca
to be the ancestral node to the tree's germline sequence, as germid as
the tree's germline sequence ID.
Description
Reroot phylogenetic tree to have its germline sequence at a zero-length branch
to a node which is the direct ancestor of the tree's UCA. Assigns uca
to be the ancestral node to the tree's germline sequence, as germid as
the tree's germline sequence ID.
Usage
rerootTree(tree, germline, min = 0.001, verbose = 1)
Arguments
tree |
An ape |
germline |
ID of the tree's predicted germline sequence |
min |
Maximum allowed branch length from germline to root |
verbose |
amount of rubbish to print |
Value
phylo object rooted at the specified germline
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.