treesEquivalent: Check whether two tree objects are equivalent

In dowser: B Cell Receptor Phylogenetics Toolkit

Check whether two tree objects are equivalent

Description

Check whether two tree objects are equivalent

Usage

treesEquivalent(
  obja,
  objb,
  edge_tol = 1e-08,
  numbering_match = FALSE,
  clonesa = NULL,
  clonesb = NULL,
  check_extended = FALSE,
  gaps = TRUE
)

Arguments

obja	First phylo or treedata object
objb	Second phylo or treedata object
edge_tol	tolerance for branch length checks (if check=TRUE)
numbering_match	require internal node numbers to match?
clonesa	Dowser clones object associated with obja (if check_extended=TRUE)
clonesb	Dowser clones object associated with objb (if check_extended=TRUE)
check_extended	Also check node sequences and state vector? Requires clonesa/b to be supplied
gaps	check sequences wth IMGT gaps with check_extended?

Details

For treedata objects, check both @phylo and @data

dowser documentation built on Aug. 20, 2026, 5:06 p.m.