writeCloneSequences: Write the sequences used in tree building to a fasta format....
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/TreeFunctions.R

writeCloneSequences

R Documentation

Write the sequences used in tree building to a fasta format. If there are more than one tree in airrClone output the sequence id will be followed by "|clone_id".

Description

writeCloneSequences Exports the sequences used in tree building.

Usage

writeCloneSequences(clones, file)

Arguments

`clones`	tibble `airrClone` objects, the output of formatClones
`file`	The file path and name of where the sequences will be saved

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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