plot.enve.TRIBStest: Enveomics: TRIBS Plot Test

In enveomics.R: Various Utilities for Microbial Genomics and Metagenomics

Enveomics: TRIBS Plot Test

Description

Plots an enve.TRIBStest object.

Usage

## S3 method for class 'enve.TRIBStest'
plot(
  x,
  type = c("overlap", "difference"),
  col = "#00000044",
  col1 = col,
  col2 = "#44001144",
  ylab = "Probability",
  xlim = range(attr(x, "dist.mids")),
  ylim = c(0, max(c(attr(x, "all.dist"), attr(x, "sel.dist")))),
  ...
)

Arguments

x	enve.TRIBStest object to plot.
type	What to plot. overlap generates a plot of the two contrasting empirical PDFs (to compare against each other), difference produces a plot of the differences between the empirical PDFs (to compare against zero).
col	Main color of the plot if type=difference.
col1	First color of the plot if type=overlap.
col2	Second color of the plot if type=overlap.
ylab	Y-axis label.
xlim	X-axis limits.
ylim	Y-axis limits.
...	Any other graphical arguments.

Value

No return value.

Author(s)

Luis M. Rodriguez-R [aut, cre]

enveomics.R documentation built on May 29, 2024, 4:17 a.m.