Man pages for idiogramFISH
Shiny App. Idiograms with Marks and Karyotype Indices
| addAttributesDfChrSize | addAttributesDfChrSize |
| addNotes | This is an internal function that adds notes |
| armRatioCI | FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks. |
| arrowPlotMark | arrowPlotMark This is an internal function that plot marks |
| asymmetry | FUNCTIONS asymmetry and asymmetryA2. |
| checkArmHolocenError | checkArmHolocenError This is an internal function that makes... |
| checkNameChrDfMarks | Function to check names of OTUs (species) among data.frames |
| chrbasicdataHolo | Chr. basic data Holo. |
| chrbasicdatamono | Chr. basic data Monocen. |
| citrusSize | FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA |
| cMPlotMark | This is an internal function that eliminates factors |
| customCeiling | Function to do ceiling at different levels |
| dfMarkStyle | Mark characteristics |
| dfToListColumn | dfToListColumn This is an internal function that makes list... |
| filterExtraOTU | filterExtraOTU This is an internal function that filters list... |
| fixChrNameDupDF | This function fixes duplicated names when no marks |
| genBankReadIF | FUNCTION genBankReadIF |
| idiogramFISH-package | idiogramFISH: Shiny App. Idiograms with Marks and Karyotype... |
| insertInList | This is an internal function that inserts in vector or list |
| makedfMarkColor | Function to automatically make a data.frame of Marks'... |
| makedfMarkColorMycolors | FUNCTION to make a data.frame of Marks' characterisitcs |
| makeNumCols | These are internal functions that eliminate factors |
| make.uniqueIF | FUNCTION make.uniqueIF |
| makeVectorNames | makeVectorNames This is an internal function that makes a... |
| mapGGChr | FUNCTIONS mapGGChr and mapGGChrMark (for ggplot) |
| mapXY | mapXY This is an internal function that creates coords for... |
| mapXYCenMimic | mapXYCenMimic This is an internal function that creates... |
| markdataholo | Mark Positional data - Holocen. |
| markDistCenGISHfix | markDistCenGISHfix This is an internal function that fixes... |
| markposDFs | Mark Positional data - monocentrics |
| mimicCenPlotMark | mimicCenPlotMark This is an internal function that plot marks |
| namesToColumns | FUNCTION that modifies marks' names into columns |
| newOrderColumn | newOrderColumn This is an internal function that adds... |
| perMark | FUNCTION perMark |
| plotDotMarks | plotDotMarks This is an internal function that plot dot marks |
| plotIdiograms | Plot idiograms of karyotypes/genomes with and without... |
| plotlabelsright | This is an internal function to plot labels to the right,... |
| plotSqMarks | sqPlotMarkCP This is an internal function that plot marks |
| posCalc | FUNCTION posCalc and fillMarkInfo |
| removeNAFromList | removeNAFromList This is an internal function that removes NA... |
| robert | FUNCTION to produce a Robertsonian translocation |
| rulerPlot | rulerPlot This is an internal function that plots rulers |
| rulerTitle | rulerTitle This is an internal function that plots rulers |
| runBoard | FUNCTION runBoard |
| textLabel | textLabel This is an internal function that plot labels of cM... |
| textLabelDots | textLabelDots This is an internal function that plot labels... |
| yVertoHor | FUNCTIONS: yVertoHor, xHortoVer, xHortoVerRoundCen,... |
