markdataholo: Mark Positional data - Holocen.

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

Mark Positional data - Holocen.

Description

When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for holocen. from top or bottom depending on param origin. See vignettes.

bigdfMarkPosHolo: Example data for mark position of holocentrics with column OTU

dfMarkPosHolo: Example data for mark position of holocentrics

dfAlloParentMarksHolo: Example data for mark position of GISH

bigdfOfMarks3Mb: Example data for mark position in Mb

bigdfMarkPosHolo2: Example data for mark position

Usage

bigdfMarkPosHolo

dfMarkPosHolo

dfAlloParentMarksHolo

bigdfOfMarks3Mb

bigdfMarkPosHolo2

Format

data.frame with columns:

OTU

OTU, species, optional

chrName

name of chromosome

markName

name of mark

markPos

position from bottom or top (see parameter origin in plotIdiograms)

markSize

size of mark in micrometers or Mb

An object of class data.frame with 6 rows and 4 columns.

An object of class data.frame with 13 rows and 4 columns.

An object of class data.frame with 12 rows and 5 columns.

An object of class data.frame with 18 rows and 6 columns.

See Also

markposDFs

plotIdiograms

chrbasicdataHolo

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.