chrbasicdatamono: Chr. basic data Monocen.

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

Chr. basic data Monocen.

Description

dfOfChrSize: Example data for monocentrics

bigdfOfChrSize: Example data for monocentrics for several species, OTU

humChr: Data for human karyotype, measured from Adler (1994)

allChrSizeSample: Example data for monocentrics for several species, OTU

parentalAndHybChrSize: Example data for monocentrics for GISH

traspadf: Example data for Tradescantia (Rhoeo) spathacea (Golczyk et al. 2005)

Usage

dfOfChrSize

bigdfOfChrSize

humChr

allChrSizeSample

parentalAndHybChrSize

traspadf

Format

data.frame with columns:

OTU

OTU, species, optional if only one OTU (species)

chrName

name of chromosome

shortArmSize

size of short arm, micrometers

longArmSize

size of long arm, micrometers

group

chr group, optional

chrNameUp

optional name over kar.

Mbp

optional name to show size in Mbp, use only when shortArmSize is not in Mbp

An object of class data.frame with 50 rows and 4 columns.

An object of class data.frame with 24 rows and 4 columns.

An object of class data.frame with 75 rows and 4 columns.

An object of class data.frame with 13 rows and 4 columns.

An object of class data.frame with 12 rows and 4 columns.

Source

http://www.pathology.washington.edu/research/cytopages/idiograms/human/

References

Adler 1994. Idiogram Album. http://www.pathology.washington.edu/research/cytopages/idiograms/human/

Golczyk H, Hasterok R, Joachimiak AJ (2005) FISH-aimed karyotyping and characterization of Renner complexes in permanent heterozygote Rhoeo spathacea. Genome 48:145-153.

See Also

plotIdiograms

armRatioCI

asymmetry

markposDFs

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.