Files in idiogramFISH
Shiny App. Idiograms with Marks and Karyotype Indices
.Rinstignore
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/sqPlotMarkCP.R
R/arrowPlotMark.R
R/robert.R
R/makedfMarkColorMycolors.R
R/fixChrNameDupDF.R
R/markposDFs.R
R/checkNameChrDfMarks.R
R/mimicCenPlotMark.R
R/rulerTitle.R
R/makedfMarkColor.R
R/plotlabelsright.R
R/makeNumCols.R
R/customCeiling.R
R/insertInList.R
R/mapGGChr.R
R/filterExtraOTU.R
R/namesToColumns.R
R/newOrderColumn.R
R/onAttach.R
R/armRatioCI.R
R/checkArmHolocenError.R
R/citrusSize.R
R/genBankReadIF.R
R/plotDotMarks.R
R/markDistCenGISHfix.R
R/mapXYCenMimic.R
R/markdataholo.R
R/make.uniqueIF.R
R/runBoard.R
R/asymmetry.R
R/idiogramFISH.R
R/cMPlotMark.R
R/textLabel.R
R/textLabelDots.R
R/makeVectorNames.R
R/posCalc.R
R/addAttributesDfChrSize.R
R/idiogramFISH-package.R
R/orientation.R
R/removeNAFromList.R
R/perMark.R
R/chrbasicdatamono.R
R/mapXY.R
R/dfToListColumn.R
R/dfMarkStyle.R
R/plotIdiograms.R
R/rulerPlot.R
R/addNotes.R
R/chrbasicdataHolo.R
inst/CITATION
inst/doc/AVignette.html
inst/doc/AVignette.R
inst/doc/index.R
inst/doc/index.Rmd
inst/doc/AVignette.Rmd
inst/doc/index.html
inst/extdata/revBayesTutorial.tree
inst/extdata/eightSpIqtree.treefile
inst/shinyApps/iBoard/ui.R
inst/shinyApps/iBoard/reactiveV.R
inst/shinyApps/iBoard/server.R
inst/shinyApps/iBoard/presetVals.R
inst/shinyApps/iBoard/www/colab-badge.svg
inst/shinyApps/iBoard/www/mystyle.css
inst/shinyApps/iBoard/www/GitHub-Mark-120px-plus.png
inst/shinyApps/iBoard/www/paramVec.rds
inst/shinyApps/iBoard/www/README2.Rmd
inst/shinyApps/iBoard/www/paramValues_old.rds
inst/shinyApps/iBoard/www/DESCRIPTION
inst/shinyApps/iBoard/www/paramValues.rds
inst/shinyApps/iBoard/www/paramVec_old.rds
inst/shinyApps/iBoard/www/refs/docs.bib
inst/shinyApps/iBoard/www/refs/software.bib
inst/shinyApps/iBoard/www/refs/clima5.csl
inst/shinyApps/iBoard/www/refs/normal_noabs.bib
inst/shinyApps/iBoard/www/refs/shinyApp.bib
inst/shinyApps/iBoard/www/refs/multiple-bibliographies.lua
inst/shinyApps/iBoard/www/man/figures/develmanualvignette.svg
inst/shinyApps/iBoard/www/man/figures/kofi1.png
inst/shinyApps/iBoard/www/man/figures/cranversion.svg
inst/shinyApps/iBoard/www/man/figures/doibadge.svg
inst/shinyApps/iBoard/www/man/figures/logo.png
inst/shinyApps/iBoard/www/man/figures/cranmanualbookdown.svg
inst/shinyApps/iBoard/www/man/figures/pkgdownver.svg
inst/shinyApps/iBoard/www/man/figures/realdownloads.svg
inst/shinyApps/iBoard/www/man/figures/gitbadge.svg
inst/shinyApps/iBoard/www/rda/mixedThreeSpChrSize.rda
inst/shinyApps/iBoard/www/rda/threeSizeCiLi.rda
inst/shinyApps/iBoard/www/rda/mixMarks.rda
inst/shinyApps/iBoard/www/rda/bothPleftNotesUp.rda
inst/shinyApps/iBoard/www/rda/mixedThreeSpMarks.rda
inst/shinyApps/iBoard/www/rda/monoholoMarks.rda
inst/shinyApps/iBoard/www/rda/bothParentalsChr.rda
inst/shinyApps/iBoard/www/rda/leftNotesdfCiRe.rda
inst/shinyApps/iBoard/www/rda/mydfMarkColor.rda
inst/shinyApps/iBoard/www/rda/bothPmarkStyle.rda
inst/shinyApps/iBoard/www/rda/bigdfOfMarks3_100Mb.rda
inst/shinyApps/iBoard/www/rda/notesschnanpu.rda
inst/shinyApps/iBoard/www/rda/leftNotesdfCiMa.rda
inst/shinyApps/iBoard/www/rda/mydfMarkPosHolo.rda
inst/shinyApps/iBoard/www/rda/monoholoCS.rda
inst/shinyApps/iBoard/www/rda/notesdfCiMa.rda
inst/shinyApps/iBoard/www/rda/notesdfCiRe.rda
inst/shinyApps/iBoard/www/rda/bigdfChrSizeHoloMb.rda
inst/shinyApps/iBoard/www/rda/citrusMaximaMarkPos.rda
inst/shinyApps/iBoard/www/rda/bothPleftNotes.rda
inst/shinyApps/iBoard/www/rda/notesdf.rda
inst/shinyApps/iBoard/www/rda/threeMarkPosCiLi.rda
inst/shinyApps/iBoard/www/rda/mydfOfMarks.rda
inst/shinyApps/iBoard/www/rda/mydfMarkColorHolo.rda
inst/shinyApps/iBoard/www/rda/mixedThreeSpMarks2.rda
inst/shinyApps/iBoard/www/rda/mixedThreeSpChrSize2.rda
inst/shinyApps/iBoard/www/rda/mydfChrSizeHolo.rda
inst/shinyApps/iBoard/www/rda/traspaMarks2.rda
inst/shinyApps/iBoard/www/rda/markStyleDFCiLi.rda
inst/shinyApps/iBoard/www/rda/markStyleDFCiRe.rda
inst/shinyApps/iBoard/www/rda/mydfMarkPosHolo2.rda
inst/shinyApps/iBoard/www/rda/dfOfMarksHetero.rda
inst/shinyApps/iBoard/www/rda/leftNotesdfCiLi.rda
inst/shinyApps/iBoard/www/rda/monoholoMarks2.rda
inst/shinyApps/iBoard/www/rda/allMarksSampleHolo.rda
inst/shinyApps/iBoard/www/rda/monoholoCS2.rda
inst/shinyApps/iBoard/www/rda/citrusschnanpuMarkPosDF.rda
inst/shinyApps/iBoard/www/rda/markStyleschnanpuDF.rda
inst/shinyApps/iBoard/www/rda/citrusschnanpu.rda
inst/shinyApps/iBoard/www/rda/bothParentalsMarks.rda
inst/shinyApps/iBoard/www/rda/markStyleDFCiMa.rda
inst/shinyApps/iBoard/www/rda/both_groups.rda
inst/shinyApps/iBoard/www/rda/bigdfMarkPosHoloMb.rda
inst/shinyApps/iBoard/www/rda/dfMarkColor3.rda
inst/shinyApps/iBoard/www/rda/mergedChrSize_groups.rda
inst/shinyApps/iBoard/www/rda/notesdfCiLi.rda
inst/shinyApps/iBoard/www/rda/allChrSizeSampleHolo.rda
inst/shinyApps/iBoard/www/rda/mydfChrSize.rda
inst/shinyApps/iBoard/www/rda/citrusReticulataMarkPosDF.rda
inst/shinyApps/iBoard/www/rda/dfMarkPosHoloHetero.rda
inst/shinyApps/iBoard/www/rda/mixedDfMarkStyle.rda
inst/shinyApps/iBoard/www/rda/citrusMaxima.rda
inst/shinyApps/iBoard/www/rda/mixChrSize.rda
inst/shinyApps/iBoard/www/rda/dfMarkColorAndStyle.rda
inst/shinyApps/iBoard/www/rda/leftNotesschnanpuUp.rda
inst/shinyApps/iBoard/www/rda/bigdfOfChrSize3_100Mb.rda
inst/shinyApps/iBoard/www/rda/traspadf2.rda
inst/shinyApps/iBoard/www/rda/mydfMarkColorHolo2.rda
inst/shinyApps/iBoard/www/rda/citrusReticulata.rda
inst/shinyApps/iBoard/rsconnect/shinyapps.io/ferapps/iboard.dcf
inst/shinyApps/iBoard/obser/obserSwap.R
inst/shinyApps/iBoard/obser/obserPresets.R
inst/shinyApps/iBoard/obser/obserNuccore.R
inst/shinyApps/iBoard/obser/obserDataframes.R
inst/shinyApps/iBoard/obser/obserColumnMod.R
inst/shinyApps/iBoard/obser/obserIndices.R
inst/shinyApps/iBoard/obser/obserPlot.R
inst/shinyApps/iBoard/obser/obserPosButtons.R
inst/shinyApps/iBoard/output/outputDataframes.R
inst/shinyApps/iBoard/output/outputPanels.R
inst/shinyApps/iBoard/output/outputTabsetpanels.R
inst/shinyApps/iBoard/output/outputLogCode.R
inst/shinyApps/iBoard/output/outputPlot.R
inst/shinyApps/iBoard/output/outputMenu.R
inst/shinyApps/iBoard/output/outputNuccore.R
inst/shinyApps/iBoard/output/outputTabs.R
build/vignette.rds
build/partial.rdb
vignettes/.install_extras
vignettes/index.Rmd
vignettes/AVignette.Rmd
vignettes/js/jquery.min.js
vignettes/js/hideOutput.js
vignettes/js/pkgdown2.js
vignettes/js/clipboard.min.js
vignettes/js/bootstrap.min.js
vignettes/refs/docs.bib
vignettes/refs/software.bib
vignettes/refs/clima5.csl
vignettes/refs/normal_noabs.bib
vignettes/refs/shinyApp.bib
vignettes/refs/multiple-bibliographies.lua
vignettes/css/mystyle.css
vignettes/css/bootstrap.minO.css
vignettes/css/mystyle3.css
vignettes/css/mystyle2.css
vignettes/css/all.minMod.css
vignettes/css/fonts/fa-regular-400.woff2
vignettes/css/fonts/fa-regular-400.svg
vignettes/css/fonts/fa-regular-400.woff
vignettes/css/fonts/fa-regular-400.eot
vignettes/css/fonts/fa-regular-400.ttf
vignettes/css/fonts/fa-regular-400a.svg
data/allChrSizeSample.rda
data/bigdfChrSizeHolo.rda
data/bigdfOfMarks.rda
data/mydfMaColor.rda
data/dfMarkColorIn.rda
data/dfOfMarks.rda
data/traspaMarks.rda
data/parentalAndHybHoloChrSize.rda
data/dfChrSizeHolo.rda
data/dfMarkPosHolo.rda
data/humMarkColor.rda
data/bigdfOfChrSize3Mb.rda
data/allMarksSample.rda
data/dfOfChrSize.rda
data/dfMarkColor.rda
data/humChr.rda
data/dfAlloParentMarksHolo.rda
data/bigdfMarkPosHolo.rda
data/parentalAndHybChrSize.rda
data/humMarkPos.rda
data/traspadf.rda
data/dfAlloParentMarks.rda
data/dfOfMarks2.rda
data/bigdfOfMarks3Mb.rda
data/dfMarkColor5S25S.rda
data/bigdfMarkPosHolo2.rda
data/bigdfOfChrSize.rda
man/dfMarkStyle.Rd
man/namesToColumns.Rd
man/robert.Rd
man/makedfMarkColor.Rd
man/cMPlotMark.Rd
man/posCalc.Rd
man/makeNumCols.Rd
man/filterExtraOTU.Rd
man/yVertoHor.Rd
man/runBoard.Rd
man/chrbasicdataHolo.Rd
man/markdataholo.Rd
man/textLabel.Rd
man/removeNAFromList.Rd
man/insertInList.Rd
man/citrusSize.Rd
man/make.uniqueIF.Rd
man/checkNameChrDfMarks.Rd
man/rulerPlot.Rd
man/plotIdiograms.Rd
man/mapXY.Rd
man/arrowPlotMark.Rd
man/newOrderColumn.Rd
man/mapGGChr.Rd
man/checkArmHolocenError.Rd
man/plotlabelsright.Rd
man/mapXYCenMimic.Rd
man/addNotes.Rd
man/makeVectorNames.Rd
man/chrbasicdatamono.Rd
man/dfToListColumn.Rd
man/textLabelDots.Rd
man/customCeiling.Rd
man/plotDotMarks.Rd
man/fixChrNameDupDF.Rd
man/asymmetry.Rd
man/markposDFs.Rd
man/idiogramFISH-package.Rd
man/markDistCenGISHfix.Rd
man/rulerTitle.Rd
man/armRatioCI.Rd
man/mimicCenPlotMark.Rd
man/makedfMarkColorMycolors.Rd
man/perMark.Rd
man/addAttributesDfChrSize.Rd
man/plotSqMarks.Rd
man/genBankReadIF.Rd
man/figures/develmanualpkgdown.svg
man/figures/README-example2-1.png
man/figures/develmanualvignette.svg
man/figures/colab-badge.svg
man/figures/README-unnamed-chunk-17-1.png
man/figures/NEWS.svg
man/figures/dfOfChrSize.png
man/figures/GitHub-Mark-120px-plus.png
man/figures/kofi1.png
man/figures/cranversion.svg
man/figures/README-unnamed-chunk-19-1.png
man/figures/README-example-1.png
man/figures/doibadge.svg
man/figures/archive.svg
man/figures/shiny.jpg
man/figures/logo.png
man/figures/cranmanualbookdown.svg
man/figures/pkgdownver.svg
man/figures/README-unnamed-chunk-21-1.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-20-1.png
man/figures/realdownloads.svg
man/figures/manual.svg
man/figures/readme.svg
man/figures/circular.png
man/figures/gitbadge.svg
man/figures/colab2.jpg
