plotSqMarks: sqPlotMarkCP This is an internal function that plot marks

Description Usage Arguments Value

View source: R/sqPlotMarkCP.R

Description

It returns a plot

Usage

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plotSqMarks(
  chromatidsCheck_1,
  chromatidsCheck_2,
  circularPlot,
  squareness,
  xMarkSq,
  yMarkSq,
  dfMarkColorInt,
  lwd.marks2,
  listMarkPosSq,
  listChrSize,
  specialChrWidth,
  chrWidth,
  yfactor,
  markN,
  ptsl,
  bannedMarkName3,
  y,
  markLabelSize,
  pattern,
  separFactor,
  labelSpacing,
  circleCenter,
  circleCenterY,
  radius,
  legend,
  ylistTransChrSimple,
  rotation,
  labelOutwards,
  x,
  xModifierMH,
  pts
)

Arguments

circularPlot

boolean TRUE for circ.

squareness

squareness of vertices <

dfMarkColorInt

colors for marks

listMarkPosSq

list of df. of mark pos.

listChrSize

chr size df list

specialChrWidth

numeric, width of chr.

chrWidth

numeric, width of chr.

yfactor

yMark distortion based on canvas proportion

y

list, y coords.

markLabelSize

numeric, font size

pattern

character, regex

separFactor

numeric, sep. kars.

labelSpacing

numeric, spacing

circleCenter

numeric

circleCenterY

numeric

radius

numeric

legend

character

rotation

rotate

labelOutwards

srt

xMark

x component of polygon

yMark

yMark component of polygon

n

numeric, to define vertices of rounded portions

lwd.chr

thick of border line

ylistTransChr

list, transf. coords.

Value

plot


idiogramFISH documentation built on Jan. 11, 2022, 1:08 a.m.