plotSqMarks: sqPlotMarkCP This is an internal function that plot marks

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

sqPlotMarkCP This is an internal function that plot marks

Description

It returns a plot

Usage

plotSqMarks(
  chromatidsCheck_1,
  chromatidsCheck_2,
  circularPlot,
  squareness,
  xMarkSq,
  yMarkSq,
  dfMarkColorInt,
  lwd.marks2,
  listMarkPosSq,
  listChrSize,
  specialChrWidth,
  chrWidth,
  yfactor,
  markN,
  ptsl,
  bannedMarkName3,
  y,
  markLabelSize,
  pattern,
  separFactor,
  labelSpacing,
  circleCenter,
  circleCenterY,
  radius,
  legend,
  ylistTransChrSimple,
  rotation,
  labelOutwards,
  x,
  xModifierMH,
  pts,
  alpha_val = 1
)

Arguments

circularPlot	boolean TRUE for circ.
squareness	squareness of vertices <
dfMarkColorInt	colors for marks
listMarkPosSq	list of df. of mark pos.
listChrSize	chr size df list
specialChrWidth	numeric, width of chr.
chrWidth	numeric, width of chr.
yfactor	yMark distortion based on canvas proportion
y	list, y coords.
markLabelSize	numeric, font size
pattern	character, regex
separFactor	numeric, sep. kars.
labelSpacing	numeric, spacing
circleCenter	numeric
circleCenterY	numeric
radius	numeric
legend	character
rotation	rotate
labelOutwards	srt
xMark	x component of polygon
yMark	yMark component of polygon
n	numeric, to define vertices of rounded portions
lwd.chr	thick of border line
ylistTransChr	list, transf. coords.

Value

plot

idiogramFISH documentation built on June 8, 2023, 6:40 a.m.