dfMarkStyle: Mark characteristics

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

Mark characteristics

Description

style column does not apply to cen. marks, only color.

dfMarkColor: Example General data for marks NOT position

humMarkColor: human bands' characteristics, from Adler (1994)

mydfMaColor: mark characteristics used in vignette of phylogeny

dfMarkColor5S25S: mark characteristics used in circular plot vignette

dfMarkColorIn: mark characteristics

Usage

dfMarkColor

humMarkColor

mydfMaColor

dfMarkColor5S25S

dfMarkColorIn

Format

dfMarkColor a data.frame with columns:

markName

name of mark

markColor

use R colors

style

character, use square or dots, optional

protruding

numeric, modifies aspect of cM/cMLeft marks, see parameter protruding in plotIdiograms, optional

An object of class data.frame with 395 rows and 3 columns.

An object of class data.frame with 6 rows and 3 columns.

An object of class data.frame with 2 rows and 3 columns.

An object of class data.frame with 5 rows and 3 columns.

Source

http://www.pathology.washington.edu/research/cytopages/idiograms/human/

References

Adler 1994. Idiogram Album. URL: http://www.pathology.washington.edu/research/cytopages/idiograms/human/

See Also

plotIdiograms

markposDFs

markdataholo

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.