perMark: FUNCTION perMark
In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

perMark

R Documentation

FUNCTION perMark

Description

calculates fraction (%) of chromosome for each mark

Usage

perMark(dfMarkPos, listOfdfChromSize, result = "list", bToRemove = "")

Arguments

`dfMarkPos`	data.frame, of marks' position
`listOfdfChromSize`	list of data.frames or data.frame of chr. sizes.
`result`	character, type of return, `"data.frame"` or `"list"`
`bToRemove`	character vector, bands to ignore

Value

list

Examples

load(system.file("shinyApps", "iBoard/www/rda/monoholoCS.rda", package = "idiogramFISH"))
load(system.file("shinyApps", "iBoard/www/rda/monoholoMarks.rda", package = "idiogramFISH"))
monoholoMarks2 <- fillMarkInfo(monoholoMarks, monoholoCS)
perMark(monoholoMarks2, monoholoCS, result = "data.frame")

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.