genBankReadIF: FUNCTION genBankReadIF
In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices
View source: R/genBankReadIF.R
genBankReadIF R Documentation
FUNCTION genBankReadIF
Description
genBankReadIF: creates a list of data.frames from a genbank
format file or a
rentrez object
Requires tidyr
Usage
genBankReadIF(filename.gb, forbiddenFields = "translation")
Arguments
filename.gb
name of file to read, downloaded from genBank, or,
object from rentrez::entrez_fetch( db="nuccore", id="theID", rettype="gbwithparts", retmode = "text" )
forbiddenFields
names of field of feature (CDS, gene) to ignore, separated by |. Defaults to "translation"
Value
list
idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.
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View source: R/genBankReadIF.R
| genBankReadIF | R Documentation |
FUNCTION genBankReadIF
Description
genBankReadIF: creates a list of data.frames from a genbank format file or a rentrez object
Requires tidyr
Usage
genBankReadIF(filename.gb, forbiddenFields = "translation")
Arguments
filename.gb |
name of file to read, downloaded from genBank, or,
object from |
forbiddenFields |
names of field of feature (CDS, gene) to ignore, separated by |. Defaults to |
Value
list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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