posCalc | R Documentation |
calculates position of marks in fraction of (%) chromosome units (0-1)
posCalc( dfMarkPos, listOfdfChromSize, bToRemove = "", markDistType = "beg", origin = "b", showBandList = FALSE, result = "tibble" ) fillMarkInfo2(dfMarkPos, dfChrSize) fillMarkInfo(dfMarkPos, dfChrSize, markDistType = "beg", origin = "b")
dfMarkPos |
data.frame of marks' position |
listOfdfChromSize |
list (for |
bToRemove, |
character, bands to remove from calc. of pos. |
markDistType |
markDistType character, if |
origin, |
character, For non-monocentric chr. (for holocentrics only) Use |
showBandList, |
boolean, show row of all bands in tibble, see |
result |
character, use |
dfChrSize |
data.frame of chr. sizes |
list, tibble
data.frame of marks
data.frame of marks
load(system.file("shinyApps", "iBoard/www/rda/monoholoCS.rda", package = "idiogramFISH") ) load(system.file("shinyApps", "iBoard/www/rda/monoholoMarks.rda", package = "idiogramFISH") ) monoholoMarks2 <- fillMarkInfo(monoholoMarks,monoholoCS) posCalc(monoholoMarks2,monoholoCS, result="data.frame")
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