checkNameChrDfMarks: Function to check names of OTUs (species) among data.frames

Description Usage Arguments Value

View source: R/checkNameChrDfMarks.R

Description

This function reads two data.frames the one with chromosome sizes, and one df with data of marks (sites) both have to have the column chrName and if several species, OTU. The functions returns a filtered list with 1. data.frame of chrSizes, 2. data.frame of marks, 3. mark names 4. max mark size.

Usage

1
checkNameChrDfMarks(listOfdfChromSize, listOfdfMarks)

Arguments

listOfdfChromSize

list of data.frames, with columns: OTU (optional), chrName, for chr. with cen.: shortArmSize, longArmSize, for holoc.: chrSize

listOfdfMarks

list of data.frames of marks (sites): OTU (opt / mandat. if in dfChrSize), chrName markName markSize, for chr. with cen.: chrRegion (p,q) markDistCen, for holoc: markPos

Value

list


idiogramFISH documentation built on Sept. 30, 2021, 5:07 p.m.