checkNameChrDfMarks: Function to check names of OTUs (species) among data.frames

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

Function to check names of OTUs (species) among data.frames

Description

This function reads two data.frames the one with chromosome sizes, and one df with data of marks (sites) both have to have the column chrName and if several species, OTU. The functions returns a filtered list with 1. data.frame of chrSizes, 2. data.frame of marks, 3. mark names 4. max mark size.

Usage

checkNameChrDfMarks(listChrSize, listOfdfMarks)

Arguments

listChrSize	list of data.frames, with columns: OTU (optional), chrName, for chr. with cen.: shortArmSize, longArmSize, for holoc.: chrSize
listOfdfMarks	list of data.frames of marks (sites): OTU (opt / mandat. if in dfChrSize), chrName markName markSize, for chr. with cen.: chrRegion (p,q) markDistCen, for holoc: markPos

Value

list

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.