armRatioCI: FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.

In idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.

Description

armRatioCI: reads a data.frame and produces AR (arm ratio), CI (centromeric index) , Guerra and Levan classifications.

swapChrRegionDfSizeAndMarks: reads data.frames to swap arms

Usage

armRatioCI(dfChrSize, rnumeric = FALSE)

swapChrRegionDfSizeAndMarks(dfChrSize, dfMarkPos, chrNamesToSwap)

Arguments

dfChrSize	name of data.frame with columns: shortArmSize, longArmSize
rnumeric	boolean, returns only numeric AR, CI
dfMarkPos	name of data.frame of marks
chrNamesToSwap	name of chr. names to swap arms

Value

data.frame (armRatioCI)

list of data.frames (swapChrRegionDfSizeAndMarks)

References

LEVAN A, FREDGA K, SANDBERG AA (1964) NOMENCLATURE FOR CENTROMERIC POSITION ON CHROMOSOMES. Hereditas 52:201-220.

Guerra. 1986. Reviewing the chromosome nomenclature of Levan et al. Braz. Jour. Gen. Vol IX, 4, 741-743

See Also

chrbasicdatamono

Examples

armRatioCI(dfOfChrSize)
armRatioCI(bigdfOfChrSize)

swapChrRegionDfSizeAndMarks(dfOfChrSize, dfOfMarks, "1")

idiogramFISH documentation built on Aug. 22, 2023, 5:08 p.m.