API for misha
Toolkit for Analysis of Genomic Data
| Global functions | |
|---|---|
| %>% | Man page |
| .coerce_pssm_matrix | Source code |
| .compute_chrom_aliases | Source code |
| .create_deferred_2d | Source code |
| .ensure_filter_compiled | Source code |
| .gcall | Source code |
| .gcall_noninteractive | Source code |
| .gcheckroot | Source code |
| .gchroms | Source code |
| .gcluster.running.jobs | Source code |
| .gconfirmtrackcreate | Source code |
| .gdb.add_intervals.set | Source code |
| .gdb.add_track | Source code |
| .gdb.cache_clear_dirty | Source code |
| .gdb.cache_dirty_path | Source code |
| .gdb.cache_is_dirty | Source code |
| .gdb.cache_mark_dirty | Source code |
| .gdb.cache_path | Source code |
| .gdb.cache_update_lists | Source code |
| .gdb.cache_write_lists | Source code |
| .gdb.convert_attrs | Source code |
| .gdb.convert_to_indexed.genome | Source code |
| .gdb.convert_to_indexed.get_confirmation | Source code |
| .gdb.convert_to_indexed.intervals | Source code |
| .gdb.convert_to_indexed.tracks | Source code |
| .gdb.convert_to_indexed.validate_and_setup | Source code |
| .gdb.convert_tracks | Source code |
| .gdb.is_indexed | Source code |
| .gdb.rm_intervals.set | Source code |
| .gdb.rm_track | Source code |
| .gdir.cd | Source code |
| .generate_2d_on_demand | Source code |
| .gexpr2str | Source code |
| .gfindtrackinpath | Source code |
| .ggetOption | Source code |
| .gintervals | Source code |
| .gintervals.apply | Source code |
| .gintervals.big.is1d | Source code |
| .gintervals.big.is2d | Source code |
| .gintervals.big.meta | Source code |
| .gintervals.big.save | Source code |
| .gintervals.big.save_meta | Source code |
| .gintervals.big2small | Source code |
| .gintervals.check_new_set | Source code |
| .gintervals.is1d | Source code |
| .gintervals.is2d | Source code |
| .gintervals.is_bigset | Source code |
| .gintervals.load | Source code |
| .gintervals.load_ext | Source code |
| .gintervals.load_file | Source code |
| .gintervals.loadable | Source code |
| .gintervals.needs_bigset | Source code |
| .gintervals.save_file | Source code |
| .gintervals.save_set_or_return | Source code |
| .gintervals.small2big | Source code |
| .giterator | Source code |
| .gnormalize_chrom_names | Source code |
| .grbind | Source code |
| .gseq.import | Source code |
| .gseq.import_multifasta | Source code |
| .gslice | Source code |
| .gtrack.array.get_colnames | Source code |
| .gtrack.array.set_colnames | Source code |
| .gtrack.attr.import | Source code |
| .gtrack.attr.set | Source code |
| .gtrack.create_test_computer2d | Source code |
| .gtrack.prepare.pvals | Source code |
| .gtrack.var.exists | Source code |
| .gtrack.var.get | Source code |
| .gtrack.var.set | Source code |
| .gtrack_is_bed_path | Source code |
| .gtrack_read_bed | Source code |
| .gtrack_set_created_attrs | Source code |
| .gverify_max_data_size | Source code |
| .gvtrack | Source code |
| .gvtrack.get | Source code |
| .gvtrack.set | Source code |
| .is_2d_deferred | Source code |
| .is_per_chromosome_db | Source code |
| .make_filter_key | Source code |
| .misha | Man page |
| .misha_env | Source code |
| .normalize_bounds | Source code |
| .onAttach | Source code |
| .onDetach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .resolve_filter_sources | Source code |
| .rm_track_dir | Source code |
| .set_vtrack_iterator_1d | Source code |
| .store_chrom_aliases | Source code |
| .track_dir | Source code |
| .validate_source_chromosomes | Source code Source code |
| calculate_optimal_gmax_data_size | Source code |
| format_bytes | Source code |
| gbins.quantiles | Man page Source code |
| gbins.summary | Man page Source code |
| gcis_decay | Man page Source code |
| gcluster.run | Man page Source code |
| gcompute_strands_autocorr | Man page Source code |
| gdb.convert_to_indexed | Man page Source code |
| gdb.create | Man page Source code |
| gdb.create_genome | Man page Source code |
| gdb.get_readonly_attrs | Man page Source code |
| gdb.info | Man page Source code |
| gdb.init | Man page Source code |
| gdb.init.examples | Man page |
| gdb.init_examples | Man page Source code |
| gdb.mark_cache_dirty | Man page Source code |
| gdb.reload | Man page Source code |
| gdb.set_readonly_attrs | Man page Source code |
| gdir.cd | Man page Source code |
| gdir.create | Man page Source code |
| gdir.cwd | Man page Source code |
| gdir.rm | Man page Source code |
| gdist | Man page Source code |
| get_bigWigToWig_bin | Source code |
| get_system_memory | Source code |
| gextract | Man page Source code |
| gftp_download | Source code |
| gftp_download_glob | Source code |
| gftp_list | Source code |
| gintervals | Man page Source code |
| gintervals.2d | Man page Source code |
| gintervals.2d.all | Man page Source code |
| gintervals.2d.band_intersect | Man page Source code |
| gintervals.2d.convert_to_indexed | Man page Source code |
| gintervals.all | Man page Source code |
| gintervals.annotate | Man page Source code |
| gintervals.as_chain | Man page Source code |
| gintervals.canonic | Man page Source code |
| gintervals.chrom_sizes | Man page Source code |
| gintervals.convert_to_indexed | Man page Source code |
| gintervals.coverage_fraction | Man page Source code |
| gintervals.covered_bp | Man page Source code |
| gintervals.diff | Man page Source code |
| gintervals.exists | Man page Source code |
| gintervals.force_range | Man page Source code |
| gintervals.import_genes | Man page Source code |
| gintervals.intersect | Man page Source code |
| gintervals.is.bigset | Man page Source code |
| gintervals.liftover | Man page Source code |
| gintervals.load | Man page Source code |
| gintervals.load_chain | Man page Source code |
| gintervals.ls | Man page Source code |
| gintervals.mapply | Man page Source code |
| gintervals.mark_overlaps | Man page Source code |
| gintervals.neighbors | Man page Source code |
| gintervals.neighbors.directional | Man page Source code |
| gintervals.neighbors.downstream | Man page Source code |
| gintervals.neighbors.upstream | Man page Source code |
| gintervals.normalize | Man page Source code |
| gintervals.path | Man page Source code |
| gintervals.quantiles | Man page Source code |
| gintervals.random | Man page Source code |
| gintervals.rbind | Man page Source code |
| gintervals.rm | Man page Source code |
| gintervals.save | Man page Source code |
| gintervals.summary | Man page Source code |
| gintervals.union | Man page Source code |
| gintervals.update | Man page Source code |
| giterator.cartesian_grid | Man page Source code |
| giterator.intervals | Man page Source code |
| glookup | Man page Source code |
| gpartition | Man page Source code |
| gquantiles | Man page Source code |
| grevcomp | Man page Source code |
| gsample | Man page Source code |
| gscreen | Man page Source code |
| gsegment | Man page Source code |
| gseq.comp | Man page Source code |
| gseq.extract | Man page Source code |
| gseq.kmer | Man page Source code |
| gseq.pwm | Man page Source code |
| gseq.rev | Man page Source code |
| gseq.revcomp | Man page |
| gsetroot | Man page Source code |
| gsummary | Man page Source code |
| gtrack.2d.create | Man page Source code |
| gtrack.2d.import | Man page Source code |
| gtrack.2d.import_contacts | Man page Source code |
| gtrack.array.extract | Man page Source code |
| gtrack.array.get_colnames | Man page Source code |
| gtrack.array.import | Man page Source code |
| gtrack.array.set_colnames | Man page Source code |
| gtrack.attr.export | Man page Source code |
| gtrack.attr.get | Man page Source code |
| gtrack.attr.import | Man page Source code |
| gtrack.attr.set | Man page Source code |
| gtrack.convert | Man page Source code |
| gtrack.convert_to_indexed | Man page Source code |
| gtrack.create | Man page Source code |
| gtrack.create_dense | Man page Source code |
| gtrack.create_dirs | Man page Source code |
| gtrack.create_pwm_energy | Man page Source code |
| gtrack.create_sparse | Man page Source code |
| gtrack.exists | Man page Source code |
| gtrack.import | Man page Source code |
| gtrack.import_mappedseq | Man page Source code |
| gtrack.import_set | Man page Source code |
| gtrack.info | Man page Source code |
| gtrack.liftover | Man page Source code |
| gtrack.lookup | Man page Source code |
| gtrack.ls | Man page Source code |
| gtrack.modify | Man page Source code |
| gtrack.path | Man page Source code |
| gtrack.rm | Man page Source code |
| gtrack.smooth | Man page Source code |
| gtrack.var.get | Man page Source code |
| gtrack.var.ls | Man page Source code |
| gtrack.var.rm | Man page Source code |
| gtrack.var.set | Man page Source code |
| gvtrack.array.slice | Man page Source code |
| gvtrack.create | Man page Source code |
| gvtrack.filter | Man page Source code |
| gvtrack.info | Man page Source code |
| gvtrack.iterator | Man page Source code |
| gvtrack.iterator.2d | Man page Source code |
| gvtrack.ls | Man page Source code |
| gvtrack.rm | Man page Source code |
| gwget | Man page Source code |
| gwilcox | Man page Source code |
| misha | Man page |
| misha-package | Man page |
| repair_names | Source code |
| rescue_ALLGENOME | Source code |
