tests/testthat/test-calculus.R

In mosaicCalc: R-Language Based Calculus Operations for Teaching

context('Calculus functions: D(), antiD(), etc.')

test_that("stats::D still accessible", {
  expect_equivalent(
		mosaicCalc::D( expression(sin(cos(x + y^2))), "x" ),
		 stats::D( expression(sin(cos(x + y^2))), "x" )
	)
  expect_equivalent(
		mosaicCalc::D( expression(sin(cos(x + y^2))), "x" ),
		        D( expression(sin(cos(x + y^2))), "x" )
	)
})

test_that("a function is created", {
  expect_true(is.function(D(sin(x) ~ x))) #symbolic Deriv
  expect_true(is.function(symbolicD(sin(x) ~ x))) #symbolic Deriv
  expect_true(is.function(numD(pt(x,3)*sin(x) ~ x))) #numerical deriv
  expect_true(is.function(antiD(pt(x,3)*sin(x) ~ x))) #antiD
})

test_that("default parameters are used", {
  g <- D( a*x^2 ~ x, a=10 )
  expect_that(g(1:10), equals(10*2*(1:10),tol=.0001) )
  expect_that(g(1:10,a=5), equals(5*2*(1:10),tol=.0001) )
})

test_that("parameters are retained even if killed in the derivative",{
  g <- D( A * x^2 + b ~ x, A = 2, b = 2, x = 3)
  expect_true( "b" %in% names(formals(g)))
})

test_that("default values of parameters are retained in the derivative",{
  g <- D(A*x^2 + b~x, A=10, b=15)
  expect_that( formals(g)[["b"]], equals(15))
  expect_that( formals(g)[["A"]], equals(10))
  g <- numD(A*x^2 + b~x, A=20, b=25)
  expect_that( formals(g)[["b"]], equals(25))
  expect_that( formals(g)[["A"]], equals(20))
})

test_that("derivs with respect to irrelevant variables are zero",{
  g <- D(a*x^2 + b~x&y, a=10, b=15)
  expect_that( body(g), equals(0))
  expect_true( "y" %in% names(formals(g)))
})

test_that("default values of parameters retained in the anti-derivative",{
  g <- antiD(A*exp(x^2) + b~x, A=10, b=15) #numerical
  expect_that( formals(g)[["b"]], equals(15))
  expect_that( formals(g)[["A"]], equals(10))
  g <- antiD(A*x^2 + b~x, A=10, b=15) #symbolic
  expect_that( formals(g)[["b"]], equals(15))
  expect_that( formals(g)[["A"]], equals(10))
})

test_that("numerical derivatives work", {
  g <- numD( a*x^2*y^2 ~ x, a=10) # numerical
  expect_that( g(x=1:10,y=5), equals(500*(1:10),tol=.0001) )
  g <- D( a*x^2*y^2 ~ x, a=10) # symbolic
  expect_that( g(x=1:10,y=5), equals(500*(1:10),tol=.0000001) )
  
  numD(ff(x, y, a=20) ~ y)
  numD(ff(x, y, a=20) ~ y & y)
  # make sure arguments are in the right order internally
})

test_that("mixed partials work", {
  g <- numD( a*x^2*y^2 ~ x&y, a=10) # numerical
  expect_that( g(x=1:10,y=5), equals(10*2*2*(1:10)*5,tol=.0001) )
  g <- D( a*x^2*y^2 ~ x&y, a=10) # symbolic
  expect_that( g(x=1:10,y=5), equals(10*2*2*(1:10)*5,tol=.0000001) )
})

test_that("unmixed 2nd-order partials work",{
  g <- numD( a*x^2 * y^2 ~ x & x, a=10, y = 2)
  expect_that( g(x = 3, y = 5), equals(500, tol = 0.001))
  g <- numD( a*x^2 * y^2 ~ y & y, a=10)
  #  expect_warning(g <- numD( a*x^2 * y^2 ~ y & y, a=10))#, "Implicit variables without default values (dangerous!):  x")

  expect_that( g(x=3, y=5), equals(180,tol=0.001))
  g <- numD( a*x^2 * y^2 ~ a  & a, a = 10, y = 2, x = 2)
  expect_that( g(x=3, y=5), equals(0,tol=0.001))
})

test_that("basic integration works", {
  f <- antiD( a*x ~ x, a=10)
  expect_that( f(3), equals(45,tol=.001))
  expect_that( f(x=3), equals(45, tol=.001))
  expect_that( f(3,a=100), equals(450, tol=.001))
  expect_that( f(x=3,a=100), equals(450, tol=.001))
})

test_that("Default limits in integrals work",{
  f <- antiD( dnorm(x) ~ x, lower.bound=-5)
  expect_that( f(x=3), equals(pnorm(3)-pnorm(-5), tol=0.001))
  f <- antiD( dnorm(x) ~ x, lower.bound=-3)
  expect_that( f(x=3), equals(pnorm(3)-pnorm(-3), tol=0.001))
  f <- antiD( dnorm(x) ~ x, lower.bound=3)
  expect_that( f(x=-3), equals(pnorm(-3)-pnorm(3), tol=0.001))
})

test_that("Integrals work with Inf args",{
  f <- antiD(dnorm(x)~x)
  expect_that( f(x=0)-f(x=-Inf),equals(.5,tol=0.0001))
  expect_that( f(x=Inf), equals(.5, tol=0.0001))
  expect_that( f(x=-Inf), equals(-.5, tol=0.0001))
})

test_that("Initial condition (constant of integration) works", {
  f <- antiD( 1+ 0*exp(t^2)~t, force.numeric=TRUE) #numerical
  expect_that( f(t=0), equals(0, tol=0.00001))
  expect_that( f(t=5), equals(5, tol=0.00001))
  expect_that( f(t=0, C=2), equals(2, tol=0.00001))
  expect_that( f(t=5, C=2), equals(7, tol=0.00001))
})

test_that("Symbols for constant of integration work", {
  vel <- antiD( -9.8 + 0*exp(t^2) ~ t  ) # numerical
  pos <- antiD( vel(t, C = v0) ~ t, v0 = 0 )
  expect_that(pos(5, v0=10, C=100), equals(27.5,tol=0.00001) )
})

test_that("derivatives work in derivatives",{
  g <- numD(a*x^2 + x*y ~ x, a = 1, x = 1, y = 2)
  h <- numD(g(x = x,y = y, a = a) ~ y, a = 1, x = 1, y = 2)
  expect_that(h(x=2,y=10),equals(1,tol=.001))
  g <- symbolicD(a * x^2 + x * y ~ x, a = 1, x = 1, y = 2)
  h <- numD( g(x = x, y = y,a = a) ~ y, a = 1, x = 1, y = 2)
  expect_that(h(x=2,y=10),equals(1,tol=.001))
})


test_that("integrals work in other functions", {
  f <- antiD( a + 0*exp(x^2)~x, a=10 ) # numerical
  h <- makeFun(f(x)~x)
  expect_that( h(4), equals(f(4)))
  h <- makeFun(f(x=x,a=100)~x)
  expect_that( h(4), equals(f(4,a=100)))
  h <- makeFun(f(x=x,a=a)~x,a=20)
  expect_that( h(4),equals(f(4,a=20)))
})

# test_that("integrals and derivatives interoperate", {
#   F <- antiD(x~x)
#   f <- mosaicCalc::D( F(x)~x )
#   expect_true( f(3) - 3 == 0)
# })

test_that("Integrate() handles numerical integration", {
  f <- makeFun(sin(x)^2 + cos(x)^2 ~ x & y)
  expect_that(Integrate(f(x,y)~ x&y, domain(x=0:2, y=-5:5)), equals(20, tol=0.00001))
  expect_that(Integrate(f(x,y)~ x&y, domain(x=2:0, y=-5:5)), equals(-20, tol=0.00001))
  expect_that(Integrate(x ~ x + y, domain(x=0:10, y=0:2)), equals(100))
  expect_that(Integrate(x ~ x + y, domain(x=0:2, y=0:10)), equals(20))
  })


test_that("integrals work on integrals", {
  one <- makeFun(1 ~ x)
  by_x <- antiD( one(x) ~ x)
  by_xy <- antiD(by_x(sqrt(1-y^2))~y)
  expect_that( by_xy(y=1)-by_xy(y=-1), equals(pi/2,tol=0.00001))
})

test_that("Basic numerical differentiation works", {
  g <- numD( a * x^2 + x * y ~ x, a = 1, x = 1, y = 1)
  expect_that( g(x=2,y=10), equals(14, tol=0.0001))
  gg <- numD( a*x^2 + x*y ~ x&x, a = 1, x = 2, y = 2)
  expect_that( gg(x=2,y=10), equals(2, tol=0.0001))
  ggg <- numD( a*x^2 + x*y ~ x&y, a=1)
  expect_that( ggg(x=2,y=10,a=10), equals(1, tol=0.0001))
})

test_that("symbolic parameters are passed correctly",{
  f <- function(n) {
    numD( b*a*x^2*y^2 ~ x & y, a=.25, b=n)
  }
  h <- function(x) {
    f(x)
  }
  g <- h(10)
  expect_that(g(1, 1), equals(10, tol=0.0001))
  expect_that(g(1, 1, b=20), equals(20, tol=0.0001))
  expect_that(g(1, 1, a=2, b=20), equals(160, tol=0.001))
})

test_that("Derivatives can be iterated.",{
  g <- numD( a*x^3 ~ x, a=10, .h=.001)
  gg <- numD( g(y)~y, .h=.01 )
  ggg <- numD( gg(x)~x, .h=.01 )
  expect_that(gg(3), equals(180, tol=.01))
  expect_that(ggg(3), equals(60, tol=.01))
})

test_that("Derivatives can be composed.",{
  ff <- makeFun( sin(x)~x )
  h <- numD( ff(x)~x )
  hh <- numD( sin(y)*ff(y)~y )
  expect_that(hh(y=3), equals(2*sin(3)*cos(3),tol=0.0001))
  hhh <- numD( sin(y)*h(y)~y )
  expect_that( hhh(y=3), equals(cos(3)*cos(3) - sin(3)*sin(3),tol=0.0001 ))
})

test_that("Vars. killed by differentiation remain arguments",{
  g <- numD( f^2*h~f&h)
  expect_that(g(f=2, h=1), equals(4,tol=0.0001))
})


test_that("symbolic derivative on simple function works",{
  f <- makeFun(x^2~x)
  g <- makeFun(sin(x)+x~x)
  fprime <- numD(f(z)~z)
  gprime <- numD(g(y)~y)
  expect_that(fprime(5), equals(2*5, tol=0.0000001))
  expect_that(gprime(2), equals(cos(2)+1, tol=0.0000001))
})

test_that("integration bug with -Inf as lower bound is worked around",{
  F <- antiD(dnorm(x)~x)
  expect_that(F(-Inf), equals(-.5, tol=0.00001))
  g <- makeFun( ifelse( x>0 & x<1, 1, 0) ~ x)
  G <- antiD(g(x)~x)
  expect_that(G(-Inf), equals(0, tol=0.00001))
})