| [,mutSignExposures,numeric,ANY,ANY-method |
Man page
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| [,mutSignExposures,numeric-method |
Man page
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| [,mutationCounts,numeric,ANY,ANY-method |
Man page
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| [,mutationCounts,numeric-method |
Man page
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| [,mutationSignatures,numeric,ANY,ANY-method |
Man page
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| [,mutationSignatures,numeric-method |
Man page
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| addWeak |
Man page
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| alexaNMF |
Man page
Source code
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| as.data.frame,mutSignExposures-method |
Man page
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| as.data.frame,mutationCounts-method |
Man page
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| as.data.frame,mutationSignatures-method |
Man page
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| as.list,mutFrameworkParams-method |
Man page
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| as.list,mutationSignatures-method |
Man page
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| as.matrix,mutationCounts-method |
Man page
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| as.mutation.counts |
Man page
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| as.mutation.counts,data.frame,ANY,ANY-method |
Man page
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| as.mutation.counts,data.frame-method |
Man page
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| as.mutation.signatures |
Man page
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| as.mutation.signatures,data.frame-method |
Man page
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| as.mutsign.exposures |
Man page
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| as.mutsign.exposures,data.frame,logical-method |
Man page
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| attachContext |
Man page
Source code
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| attachMutType |
Man page
Source code
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| bootstrapCancerGenomes |
Man page
|
| cbind2 |
Man page
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| cbind2,mutationSignatures,mutationSignatures-method |
Man page
|
| chihJenNMF |
Man page
Source code
|
| coerceObj |
Man page
|
| coerceObj,data.frame,character-method |
Man page
|
| coerceObj,mutFrameworkParams,character-method |
Man page
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| coerceObj,mutSignExposures,character-method |
Man page
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| coerceObj,mutationCounts,character-method |
Man page
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| coerceObj,mutationSignatures,character-method |
Man page
|
| countMutTypes |
Man page
|
| custom_cssls |
Man page
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| custom_fcnnls |
Man page
|
| decipherMutationalProcesses |
Man page
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| deconvoluteMutCounts |
Man page
Source code
|
| evaluateStability |
Man page
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| extractSignatures |
Man page
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| extractXvarlinkData |
Man page
Source code
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| filterOutIterations |
Man page
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| filterSNV |
Man page
Source code
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| frequencize |
Man page
Source code
|
| getCosmicSignatures |
Man page
Source code
|
| getCounts |
Man page
|
| getCounts,mutationCounts-method |
Man page
|
| getFwkParam |
Man page
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| getFwkParam,mutFrameworkParams,character-method |
Man page
|
| getMutationTypes |
Man page
|
| getMutationTypes,mutationCounts-method |
Man page
|
| getMutationTypes,mutationSignatures-method |
Man page
|
| getSampleIdentifiers |
Man page
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| getSampleIdentifiers,mutSignExposures-method |
Man page
|
| getSampleIdentifiers,mutationCounts-method |
Man page
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| getSignatureIdentifiers |
Man page
|
| getSignatureIdentifiers,mutSignExposures-method |
Man page
|
| getSignatureIdentifiers,mutationSignatures-method |
Man page
|
| getTestRunArgs |
Man page
|
| importVCFfiles |
Man page
Source code
|
| initialize,mutFrameworkParams-method |
Man page
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| initialize,mutSignExposures-method |
Man page
|
| initialize,mutationCounts-method |
Man page
|
| initialize,mutationSignatures-method |
Man page
|
| leadZeros |
Man page
|
| matchSignatures |
Man page
Source code
|
| msigPlot |
Man page
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| msigPlot,mutSignExposures-method |
Man page
|
| msigPlot,mutationCounts-method |
Man page
|
| msigPlot,mutationSignatures-method |
Man page
|
| mutFrameworkParams-class |
Man page
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| mutSigData |
Man page
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| mutSignExposures-class |
Man page
|
| mutSignatures-package |
Man page
|
| mutationCounts-class |
Man page
|
| mutationSignatures-class |
Man page
|
| plotMutTypeProfile |
Man page
Source code
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| plotSignExposures |
Man page
Source code
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| prelimProcessAssess |
Man page
Source code
|
| print,mutFrameworkParams-method |
Man page
|
| print,mutSignExposures-method |
Man page
|
| print,mutationCounts-method |
Man page
|
| print,mutationSignatures-method |
Man page
|
| processVCFdata |
Man page
Source code
|
| removeMismatchMut |
Man page
Source code
|
| removeWeak |
Man page
|
| resolveMutSignatures |
Man page
Source code
|
| revCompl |
Man page
|
| setFwkParam |
Man page
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| setFwkParam,mutFrameworkParams,character,ANY-method |
Man page
|
| setFwkParam,mutFrameworkParams,character-method |
Man page
|
| setMutClusterParams |
Man page
Source code
|
| show,mutFrameworkParams-method |
Man page
|
| show,mutSignExposures-method |
Man page
|
| show,mutationCounts-method |
Man page
|
| show,mutationSignatures-method |
Man page
|
| silhouetteMLB |
Man page
|
| simplifySignatures |
Man page
Source code
|
| sortByMutations |
Man page
Source code
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| table2df |
Man page
Source code
|
