API for pmartR
Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data
| Global functions | |
|---|---|
| %>% | Man page |
| %dopar% | Man page |
| .as.isobaricpepData | Source code |
| .as.lipidData | Source code |
| .as.metabData | Source code |
| .as.nmrData | Source code |
| .as.pepData | Source code |
| .as.proData | Source code |
| .as.seqData | Source code |
| .getDownloadsFolder | Source code |
| .is_edata | Man page Source code |
| .spans_procedure | Source code |
| DESeq2_wrapper | Man page Source code |
| MSnSet2pepData | Source code |
| RNA_filter | Man page Source code |
| all_subset | Man page Source code |
| anova_cpp | Source code |
| anova_filter | Man page Source code |
| anova_test | Man page Source code |
| applyFilt | Man page Source code |
| applyFilt.RNAFilt | Man page Source code |
| applyFilt.customFilt | Man page Source code |
| applyFilt.cvFilt | Man page Source code |
| applyFilt.imdanovaFilt | Man page Source code |
| applyFilt.moleculeFilt | Man page Source code |
| applyFilt.proteomicsFilt | Man page Source code |
| applyFilt.rmdFilt | Man page Source code |
| applyFilt.totalCountFilt | Man page Source code |
| as.anyData | Source code |
| as.diffData | Source code |
| as.isobaricpepData | Man page Source code |
| as.lipidData | Man page Source code |
| as.metabData | Man page Source code |
| as.multiData | Man page Source code |
| as.nmrData | Man page Source code |
| as.pepData | Man page Source code |
| as.proData | Man page Source code |
| as.seqData | Man page Source code |
| as.trelliData | Man page Source code |
| as.trelliData.edata | Man page Source code |
| bpquant | Man page Source code |
| bpquant_mod | Man page Source code |
| column_matches_exact | Man page Source code |
| combine_omicsData | Man page Source code |
| combine_techreps | Man page Source code |
| complete_mols | Man page Source code |
| compute_betas | Source code |
| cor_result | Man page Source code |
| count_missing_cpp | Source code |
| create_comparisonDF | Man page Source code |
| custom_filter | Man page Source code |
| custom_sampnames | Man page Source code |
| cv_filter | Man page Source code |
| determine_significance | Source code |
| diffexp_seq | Man page Source code |
| dim_reduction | Man page Source code |
| dispersion_est | Man page Source code |
| edata_replace | Man page Source code |
| edata_summary | Man page Source code |
| edata_transform | Man page Source code |
| edgeR_wrapper | Man page Source code |
| find_fmeta_cnames | Man page Source code |
| fit_surv | Man page Source code |
| fmeta_matches | Man page Source code |
| fold_change_diff | Source code |
| fold_change_diff_na_okay | Source code |
| fold_change_diff_row | Source code |
| fold_change_ratio | Source code |
| get_check_names | Man page Source code |
| get_comparisons | Man page Source code |
| get_data_class | Man page Source code |
| get_data_info | Man page Source code |
| get_data_norm | Man page Source code |
| get_data_scale | Man page Source code |
| get_data_scale_orig | Man page Source code |
| get_edata_cname | Man page Source code |
| get_emeta_cname | Man page Source code |
| get_fdata_cname | Man page Source code |
| get_filter_type | Man page Source code |
| get_filters | Man page Source code |
| get_group_DF | Man page Source code |
| get_group_formula | Man page Source code |
| get_group_table | Man page Source code |
| get_isobaric_info | Man page Source code |
| get_isobaric_norm | Man page Source code |
| get_lsmeans | Man page |
| get_meta_info | Man page Source code |
| get_nmr_info | Man page Source code |
| get_nmr_norm | Man page Source code |
| get_pred_grid | Man page |
| get_spans_params | Man page Source code |
| group_comparison_anova | Man page Source code |
| group_comparison_anova_cpp | Source code |
| group_comparison_imd | Man page Source code |
| group_designation | Man page Source code |
| gtest_filter | Man page Source code |
| gtest_heatmap | Man page |
| holm_cpp | Source code |
| imd_anova | Man page Source code |
| imd_cov | Source code |
| imd_test | Man page Source code |
| imdanova_filter | Man page Source code |
| isoformRes_func | Source code |
| isonorm | Source code |
| kw_rcpp | Source code |
| logify | Source code |
| los | Man page Source code |
| mad_transform | Man page Source code |
| make_volcano_plot_df | Man page |
| mean_center | Man page Source code |
| median_center | Man page Source code |
| missingval_result | Man page Source code |
| molecule_filter | Man page Source code |
| mutate_fdata | Source code |
| nmrnorm | Source code |
| nonmissing_per_group | Man page Source code |
| nonmissing_per_grp | Source code |
| normRes_tests | Man page Source code |
| normalize_global | Man page Source code |
| normalize_global_basic | Man page Source code |
| normalize_isobaric | Man page Source code |
| normalize_loess | Man page Source code |
| normalize_nmr | Man page Source code |
| normalize_quantile | Man page Source code |
| normalize_zero_one_scaling | Man page Source code |
| p_adjustment_anova | Man page |
| paired_test | Source code |
| plot.RNAFilt | Man page Source code |
| plot.SPANSRes | Man page Source code |
| plot.corRes | Man page Source code |
| plot.customFilt | Man page |
| plot.cvFilt | Man page Source code |
| plot.dataRes | Man page Source code |
| plot.dimRes | Man page |
| plot.imdanovaFilt | Man page Source code |
| plot.isobaricnormRes | Man page Source code |
| plot.isobaricpepData | Man page |
| plot.lipidData | Man page |
| plot.metabData | Man page |
| plot.moleculeFilt | Man page Source code |
| plot.naRes | Man page |
| plot.nmrData | Man page |
| plot.nmrnormRes | Man page Source code |
| plot.normRes | Man page |
| plot.pepData | Man page |
| plot.proData | Man page |
| plot.proteomicsFilt | Man page Source code |
| plot.rmdFilt | Man page Source code |
| plot.seqData | Man page |
| plot.statRes | Man page |
| plot.totalCountFilt | Man page Source code |
| plot_km | Man page Source code |
| pmartR | Man page |
| pmartR-package | Man page |
| pmartR_filter_worker | Man page Source code |
| pooled_cv_rcpp | Source code |
| ppp | Man page Source code |
| ppp_rip | Man page Source code |
| pquant | Man page |
| pre_flight | Source code |
| pre_imdanova_melt | Man page Source code |
| prep_flags | Man page |
| prime_iso | Source code |
| print.RNAFilt | Man page Source code |
| print.RNAFiltSummary | Man page Source code |
| print.customFilt | Man page Source code |
| print.customFilterSummary | Man page Source code |
| print.cvFilt | Man page Source code |
| print.cvFilterSummary | Man page Source code |
| print.dataRes | Man page Source code |
| print.imdanovaFilt | Man page Source code |
| print.imdanovaFilterSummary | Man page Source code |
| print.lipidData | Man page Source code |
| print.metabData | Man page Source code |
| print.moleculeFilt | Man page Source code |
| print.moleculeFilterSummary | Man page Source code |
| print.multiData | Source code |
| print.normRes | Man page Source code |
| print.pepData | Man page Source code |
| print.proData | Man page Source code |
| print.proteomicsFilt | Man page Source code |
| print.proteomicsFilterSummary | Man page Source code |
| print.rmdFilt | Man page Source code |
| print.rmdFilterSummary | Man page Source code |
| print.seqData | Man page Source code |
| print.statRes | Source code |
| print.totalCountFilt | Man page Source code |
| print.totalCountFiltSummary | Man page Source code |
| protein_quant | Man page Source code |
| proteomics_filter | Man page Source code |
| ptukey_speed | Source code |
| qrollup | Man page |
| quick_cog | Source code |
| reexports | Man page |
| replace_nas | Man page Source code |
| replace_zeros | Man page Source code |
| report_dataRes | Man page Source code |
| rip | Man page Source code |
| rmd_conversion | Man page Source code |
| rmd_filter | Man page Source code |
| rrollup | Man page |
| run_group_meancor | Man page Source code |
| run_kurtosis | Man page Source code |
| run_mad | Man page Source code |
| run_prop_missing | Man page Source code |
| run_skewness | Man page Source code |
| run_twofactor_cpp | Source code |
| set_check_names | Man page Source code |
| set_data_info | Man page Source code |
| set_filter | Man page Source code |
| set_isobaric_info | Man page Source code |
| set_meta_info | Man page Source code |
| set_nmr_info | Man page Source code |
| spans_make_distribution | Man page Source code |
| spans_procedure | Man page Source code |
| statRes-class | Man page |
| statRes_output | Man page Source code |
| statres_barplot | Man page |
| statres_volcano_plot | Man page |
| str_col | Source code |
| subset_names | Source code |
| summarizer | Source code |
| summary-isobaricnormRes | Man page |
| summary-nmrnormRes | Man page |
| summary-omicsData | Man page |
| summary-pmartR-results | Man page |
| summary-trelliData | Man page |
| summary.RNAFilt | Man page Source code |
| summary.SPANSRes | Man page Source code |
| summary.corRes | Man page Source code |
| summary.customFilt | Man page Source code |
| summary.cvFilt | Man page Source code |
| summary.dimRes | Man page Source code |
| summary.imdanovaFilt | Man page Source code |
| summary.isobaricnormRes | Man page Source code |
| summary.lipidData | Man page Source code |
| summary.metabData | Man page Source code |
| summary.moleculeFilt | Man page Source code |
| summary.multiData | Source code |
| summary.nmrData | Man page Source code |
| summary.nmrnormRes | Man page Source code |
| summary.normRes | Man page Source code |
| summary.pepData | Man page Source code |
| summary.proData | Man page Source code |
| summary.proteomicsFilt | Man page Source code |
| summary.rmdFilt | Man page Source code |
| summary.seqData | Man page Source code |
| summary.statRes | Source code |
| summary.totalCountFilt | Man page Source code |
| summary.trelliData | Man page Source code |
| summary_km | Man page Source code |
| surv_designation | Man page Source code |
| take_diff | Man page |
| total_count_filter | Man page Source code |
| trelli_abundance_boxplot | Man page Source code |
| trelli_abundance_heatmap | Man page Source code |
| trelli_abundance_histogram | Man page Source code |
| trelli_builder | Source code |
| trelli_foldchange_bar | Man page Source code |
| trelli_foldchange_boxplot | Man page Source code |
| trelli_foldchange_heatmap | Man page Source code |
| trelli_foldchange_volcano | Man page Source code |
| trelli_missingness_bar | Man page Source code |
| trelli_panel_by | Man page Source code |
| trelli_precheck | Man page Source code |
| trelli_pvalue_filter | Man page Source code |
| trelli_rnaseq_boxplot | Man page Source code |
| trelli_rnaseq_heatmap | Man page Source code |
| trelli_rnaseq_histogram | Man page Source code |
| trelli_rnaseq_nonzero_bar | Man page Source code |
| two_factor_anova_cpp | Source code |
| unpooled_cv_rcpp | Source code |
| vector_replace | Man page Source code |
| voom_wrapper | Man page Source code |
| wrap_message | Source code |
| zero_one_scale | Man page Source code |
| zrollup | Man page |
| zscore_transform | Man page Source code |
