Files in pureseqtmr
Predict Transmembrane Protein Topology

MD5
NAMESPACE
DESCRIPTION
R/RcppExports.R R/is_topology_line.R R/is_valid_protein_sequence.R R/get_pureseqtm_version.R R/is_on_ci.R R/are_valid_protein_sequences.R R/check_topology_str.R R/check_protein_sequence.R R/check_topology.R R/predict_topologies_from_sequences.R R/is_tmh.R R/plot_topology.R R/save_tibble_as_fasta_file.R R/predict_topology.R R/predict_topology_from_sequence.R R/pureseqtmr.R R/check_pureseqtm_installation.R R/install_pureseqtm.R R/count_n_tmhs.R R/get_default_pureseqtm_folder.R R/check_protein_sequences.R R/create_pureseqtm_files.R R/calc_distance_to_tmh_center_from_topology_str.R R/default_params_doc.R R/convert_tmhmm_to_pureseqtm_topology.R R/create_pureseqtm_proteome_file.R R/run_pureseqtm_proteome.R R/calc_distance_to_tmh_center_from_topology.R R/is_pureseqtm_installed.R R/pureseqtmr_report.R R/load_topology_file_as_tibble.R R/mock_predict_topologies_from_sequences.R R/tally_tmhs.R R/use_rcpp.R R/load_fasta_file_as_tibble_r.R R/are_tmhs.R R/get_pureseqtm_url.R R/load_fasta_file_as_tibble.R R/parse_pureseqtm_proteome_text.R R/get_example_filename.R R/mock_predict_topology.R R/uninstall_pureseqtm.R R/is_protein_name_line.R R/get_example_filenames.R R/load_fasta_file_as_tibble_cpp.R
src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp
src/load_fasta_file_as_tibble_cpp_stl.cpp
src/RcppExports.cpp
src/load_fasta_file_as_tibble_cpp_raw.cpp
src/load_fasta_file_as_tibble_cpp_raw.h
src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.h
src/load_fasta_file_as_tibble_cpp_stl.h
inst/doc/demo.Rmd inst/doc/demo.R
inst/doc/demo.html
inst/extdata/5728.topo
inst/extdata/5728.fasta
inst/extdata/UP000005640_9606_no_u.tmhmm
inst/extdata/human_selenoproteins.fasta
inst/extdata/100507436.topo
inst/extdata/UP000464024.fasta
inst/extdata/short.fasta
inst/extdata/garbage.fasta
build/vignette.rds
vignettes/demo.Rmd man/get_pureseqtm_version.Rd man/is_topology_line.Rd man/predict_topology.Rd man/is_pureseqtm_installed.Rd man/tally_tmhs.Rd man/check_protein_sequence.Rd man/mock_predict_topology.Rd man/load_fasta_file_as_tibble_cpp_raw.Rd man/save_tibble_as_fasta_file.Rd man/check_protein_sequences.Rd man/mock_predict_topologies_from_sequences.Rd man/install_pureseqtm.Rd man/create_pureseqtm_files.Rd man/plot_topology.Rd man/calc_distance_to_tmh_center_from_topology_str_cpp_stl.Rd man/predict_topology_from_sequence.Rd man/calc_distance_to_tmh_center_from_topology_str.Rd man/is_tmh.Rd man/are_tmhs.Rd man/count_n_tmhs.Rd man/uninstall_pureseqtm.Rd man/check_topology.Rd man/check_topology_str.Rd man/is_on_github_actions.Rd man/is_on_ci.Rd man/load_fasta_file_as_tibble_r.Rd man/get_example_filename.Rd man/load_fasta_file_as_tibble.Rd man/calc_distance_to_tmh_center_from_topology.Rd man/pureseqtmr.Rd man/default_params_doc.Rd man/predict_topologies_from_sequences.Rd man/is_on_appveyor.Rd man/is_valid_protein_sequence.Rd man/run_pureseqtm_proteome.Rd man/is_protein_name_line.Rd man/load_fasta_file_as_tibble_cpp.Rd man/is_on_travis.Rd man/load_topology_file_as_tibble.Rd man/get_pureseqtm_url.Rd man/are_valid_protein_sequences.Rd man/get_example_filenames.Rd man/convert_tmhmm_to_pureseqtm_topology.Rd man/parse_pureseqtm_proteome_text.Rd man/get_default_pureseqtm_folder.Rd man/create_pureseqtm_proteome_file.Rd man/pureseqtmr_report.Rd man/check_pureseqtm_installation.Rd
man/figures/GitHubActions.png
man/figures/AppVeyor.png
man/figures/TravisCI.png
man/figures/sars_cov_2_topology.png
man/figures/Codecov.png
pureseqtmr documentation built on April 6, 2023, 5:20 p.m.