write.feat: Writing a features Object

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

Write a features object to a file in GFF format.

Usage

write.feat(x, file)

Arguments

x	an object of type feat
file	The name of the file to write to (will be overwritten)

Author(s)

Melissa J. Hubisz and Adam Siepel

Examples

seq <- rep("hg18.chr6", 10)
src <- rep("fake_example", 10)
feature <- rep("CDS", 10)
start <- seq(1, 100, by=10)
end <- seq(10, 100, by=10)
f <- feat(seq, src, feature, start, end)
write.feat(f, "test.gff")

unlink("test.gff") # clean up

rphast documentation built on May 1, 2019, 9:26 p.m.