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inst/examples/guess-format-msa.R
In rphast: Interface to 'PHAST' Software for Comparative Genomics
exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
files <- c("ENr334-100k.maf", "ENr334-100k.fa", "ENr334-100k.ss", "sol1.maf", "sol1.gp")
unzip(exampleArchive, files=files)
guess.format.msa(files)
# the last file is not an alignment, which is why it returns UNKNOWN
unlink(files)
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rphast documentation built on May 1, 2019, 9:26 p.m.
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exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
files <- c("ENr334-100k.maf", "ENr334-100k.fa", "ENr334-100k.ss", "sol1.maf", "sol1.gp")
unzip(exampleArchive, files=files)
guess.format.msa(files)
# the last file is not an alignment, which is why it returns UNKNOWN
unlink(files)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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