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inst/examples/phastCons.R
In rphast: Interface to 'PHAST' Software for Comparative Genomics
exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
files <- c("ENr334-100k.fa", "rev.mod")
unzip(exampleArchive, files)
mod <- read.tm("rev.mod")
msa <- read.msa("ENr334-100k.fa")
rv <- phastCons(msa, mod)
names(rv)
rv2 <- phastCons(msa, mod, estimate.trees=TRUE)
names(rv2)
rv2$tree.models
unlink(files)
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rphast documentation built on May 1, 2019, 9:26 p.m.
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exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
files <- c("ENr334-100k.fa", "rev.mod")
unzip(exampleArchive, files)
mod <- read.tm("rev.mod")
msa <- read.msa("ENr334-100k.fa")
rv <- phastCons(msa, mod)
names(rv)
rv2 <- phastCons(msa, mod, estimate.trees=TRUE)
names(rv2)
rv2$tree.models
unlink(files)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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