Nothing
inst/examples/plot-lsmodel-tm.R
In rphast: Interface to 'PHAST' Software for Comparative Genomics
exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
filename <- "rev.mod"
unzip(exampleArchive, filename)
tm <- read.tm(filename)
tm <- add.ls.mod(tm, branch="mm9", subst.mod="HKY85")
plot.lsmodel.tm(tm, 1)
tm$ls.model$backgd <- c(0.9, 0.05, 0.03, 0.02)
plot.lsmodel.tm(tm, 1)
plot.rate.matrix(tm[["rate.matrix"]],
eq.freq=tm[["backgd"]],
filled=FALSE,
alphabet=tm[["alphabet"]])
unlink(filename)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
rphast documentation built on May 1, 2019, 9:26 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
exampleArchive <- system.file("extdata", "examples.zip", package="rphast")
filename <- "rev.mod"
unzip(exampleArchive, filename)
tm <- read.tm(filename)
tm <- add.ls.mod(tm, branch="mm9", subst.mod="HKY85")
plot.lsmodel.tm(tm, 1)
tm$ls.model$backgd <- c(0.9, 0.05, 0.03, 0.02)
plot.lsmodel.tm(tm, 1)
plot.rate.matrix(tm[["rate.matrix"]],
eq.freq=tm[["backgd"]],
filled=FALSE,
alphabet=tm[["alphabet"]])
unlink(filename)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.