inst/examples/sub-msa.R

m <- msa(seqs=c("ACGT---AT", "AGGTAGTAA", "AGGAAGTAG"),
         names=c("human", "mouse", "rat"))
print(sub.msa(m, c("human", "rat"), start.col=3, end.col=6),
      print.seq=TRUE)
print(sub.msa(m, c("mouse"), keep=FALSE, refseq="human",
              start.col=3, end.col=4),
      print.seq=TRUE)

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rphast documentation built on May 30, 2017, 5:13 a.m.