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inst/examples/sub-msa.R
In rphast: Interface to 'PHAST' Software for Comparative Genomics
m <- msa(seqs=c("ACGT---AT", "AGGTAGTAA", "AGGAAGTAG"),
names=c("human", "mouse", "rat"))
print(sub.msa(m, c("human", "rat"), start.col=3, end.col=6),
print.seq=TRUE)
print(sub.msa(m, c("mouse"), keep=FALSE, refseq="human",
start.col=3, end.col=4),
print.seq=TRUE)
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rphast documentation built on May 1, 2019, 9:26 p.m.
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m <- msa(seqs=c("ACGT---AT", "AGGTAGTAA", "AGGAAGTAG"),
names=c("human", "mouse", "rat"))
print(sub.msa(m, c("human", "rat"), start.col=3, end.col=6),
print.seq=TRUE)
print(sub.msa(m, c("mouse"), keep=FALSE, refseq="human",
start.col=3, end.col=4),
print.seq=TRUE)
Try the rphast package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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